Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACKTTZ_RS04365 Genome accession   NZ_AP035792
Coordinates   991631..992980 (+) Length   449 a.a.
NCBI ID   WP_034696125.1    Uniprot ID   -
Organism   Chryseobacterium sp. KCF3-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 986631..997980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTTZ_RS04345 (KCF3NO3_08560) - 986831..987586 (+) 756 WP_407847530.1 SDR family NAD(P)-dependent oxidoreductase -
  ACKTTZ_RS04350 - 987499..988869 (+) 1371 WP_407847532.1 phosphatase PAP2 family protein -
  ACKTTZ_RS04355 (KCF3NO3_08580) - 988873..990573 (+) 1701 WP_034696124.1 bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase -
  ACKTTZ_RS04360 (KCF3NO3_08590) - 990922..991491 (-) 570 WP_253317626.1 YceI family protein -
  ACKTTZ_RS04365 (KCF3NO3_08600) radA 991631..992980 (+) 1350 WP_034696125.1 DNA repair protein RadA Machinery gene
  ACKTTZ_RS04370 (KCF3NO3_08610) - 993388..993981 (+) 594 WP_034696126.1 ACP phosphodiesterase -
  ACKTTZ_RS04375 (KCF3NO3_08620) - 994115..995893 (-) 1779 WP_407847535.1 hypothetical protein -
  ACKTTZ_RS04380 (KCF3NO3_08630) - 996395..996910 (-) 516 WP_407847537.1 DUF6702 family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49941.53 Da        Isoelectric Point: 6.5064

>NTDB_id=110836 ACKTTZ_RS04365 WP_034696125.1 991631..992980(+) (radA) [Chryseobacterium sp. KCF3-3]
MAKLKTAYFCQNCGTQYPQWLGQCKNCGEWNTLVEEVVEKPSHKTPPFSKTKQHVINIVEVETSEEPRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKVFYVSGEESASQIKMRADRLTDIQNPNCFLFTETSLEKILHEAKKL
EPDFVIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
CTGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVIASVLSSNEDIAISEHYCFAGEIGLSGEIRPV
AQIEQRITEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=110836 ACKTTZ_RS04365 WP_034696125.1 991631..992980(+) (radA) [Chryseobacterium sp. KCF3-3]
ATGGCAAAACTGAAAACAGCATATTTCTGTCAAAACTGCGGAACCCAGTATCCTCAATGGCTGGGACAATGTAAAAACTG
TGGAGAATGGAACACTTTAGTAGAAGAGGTTGTAGAGAAACCGTCTCATAAAACTCCTCCTTTTTCAAAAACCAAACAAC
ATGTCATCAATATTGTTGAAGTGGAAACCAGCGAAGAGCCGAGAATAAAAACACCTTCTGAAGAACTTAACCGTGTTTTG
GGAGGAGGAATTGTTTTGGGTTCTGTGACTCTGATTGGCGGCGAACCGGGAATCGGAAAATCTACCCTTTTGCTTCAGCT
TGCTTTGAAAATGAAGAAAAAAGTTTTCTATGTTTCTGGGGAAGAAAGTGCTTCTCAGATTAAAATGAGAGCGGACAGAC
TTACAGACATTCAAAATCCGAACTGTTTTCTTTTCACTGAAACTTCATTGGAAAAAATTCTTCATGAGGCCAAAAAACTG
GAACCTGATTTCGTGATCATTGATTCTATTCAGACCCTGCAGTCTCAACTGATAGAAAGTTCTCCGGGAACTGTTTCTCA
AATCAGAGAATGTTCTAATGAAATTATCAAATATGCCAAAGAAAATAACACTCCTGTCTTCCTTGTAGGACACATTACCA
AAGACGGACAAATTGCCGGACCAAAAGTTCTGGAGCATATGGTGGATGTTGTTCTGAATTTTGATGGAGACCGAAATCAC
CTTTTCAGATTATTAAGGGCTAATAAAAATCGTTTTGGTTCTACTTCAGAAATTGGAATCTATGAAATGATTTCTCAGGG
ATTGAAAGAGATTAAAAACCCTTCTGAAATTCTGATCACCAAAAAATTTGAAGAACTTTCCGGAAACTCCGTTGCCGTAA
CTCTGGAAGGAAACCGACCTATGCTTCTGGAGATTCAGGCATTGGTGAGTACAGCTGTTTACGGAACTCCTCAAAGAAGC
TGTACCGGTTTTGACTCCAAAAGACTGAATATGCTTTTGGCTGTACTGGAAAAAAGAGCAGGTTTCCAATTGGGAGCAAA
AGACGTTTTCCTGAATATTACCGGAGGAATAAAAACAGACGATCCGGCACTGGATTTAGCGGTCATTGCTTCTGTTCTTT
CCTCTAATGAAGATATTGCGATTTCTGAACATTACTGCTTTGCCGGAGAAATCGGATTAAGTGGTGAAATTCGTCCGGTA
GCCCAGATTGAACAGCGAATTACTGAGGCTGAAAAATTAGGTTATGAGAAAATATTTGTTTCCAATCTTAATAAAATCCC
GAAAAGAAAATTTGGAATCAAGATTGAAGAAGTGAGTAAGATTGAAGATTTTCATGAGAGACTTTTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.558

100

0.499
  radA Streptococcus pneumoniae Rx1

48.684

100

0.494
  radA Streptococcus pneumoniae D39

48.684

100

0.494
  radA Streptococcus pneumoniae R6

48.684

100

0.494
  radA Streptococcus pneumoniae TIGR4

48.684

100

0.494
  radA Streptococcus mitis NCTC 12261

48.684

100

0.494
  radA Streptococcus mitis SK321

50.591

94.209

0.477

Multiple sequence alignment