Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACOBVC_RS16220 Genome accession   NZ_CP184400
Coordinates   3290756..3291352 (-) Length   198 a.a.
NCBI ID   WP_420195944.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain VHVKP9     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3285756..3296352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOBVC_RS16205 helD 3285964..3288018 (-) 2055 WP_004224033.1 DNA helicase IV -
  ACOBVC_RS16210 - 3288143..3288589 (+) 447 WP_004224032.1 YccF domain-containing protein -
  ACOBVC_RS16215 yccS 3288607..3290742 (+) 2136 WP_002898422.1 YccS family putative transporter -
  ACOBVC_RS16220 sxy/tfoX 3290756..3291352 (-) 597 WP_420195944.1 TfoX/Sxy family DNA transformation protein Regulator
  ACOBVC_RS16225 sulA 3291701..3292210 (+) 510 WP_420195945.1 SOS-induced cell division inhibitor SulA -
  ACOBVC_RS16230 ompA 3292563..3293633 (+) 1071 WP_002898408.1 porin OmpA -
  ACOBVC_RS16235 matP 3293765..3294217 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACOBVC_RS16240 - 3294403..3296160 (+) 1758 WP_004224030.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22538.16 Da        Isoelectric Point: 10.2362

>NTDB_id=1108343 ACOBVC_RS16220 WP_420195944.1 3290756..3291352(-) (sxy/tfoX) [Klebsiella pneumoniae strain VHVKP9]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDHTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1108343 ACOBVC_RS16220 WP_420195944.1 3290756..3291352(-) (sxy/tfoX) [Klebsiella pneumoniae strain VHVKP9]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATCATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505

Multiple sequence alignment