Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | ACKTTZ_RS03370 | Genome accession | NZ_AP035792 |
| Coordinates | 738542..739195 (+) | Length | 217 a.a. |
| NCBI ID | WP_034696813.1 | Uniprot ID | - |
| Organism | Chryseobacterium sp. KCF3-3 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 733542..744195
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKTTZ_RS03360 (KCF3NO3_06600) | aceB | 734755..736329 (-) | 1575 | WP_407847331.1 | malate synthase A | - |
| ACKTTZ_RS03365 (KCF3NO3_06610) | - | 736456..737937 (+) | 1482 | WP_407847333.1 | helix-turn-helix domain-containing protein | - |
| ACKTTZ_RS03370 (KCF3NO3_06620) | comF | 738542..739195 (+) | 654 | WP_034696813.1 | ComF family protein | Machinery gene |
| ACKTTZ_RS03375 (KCF3NO3_06630) | - | 739348..740034 (+) | 687 | WP_407847335.1 | alpha/beta fold hydrolase | - |
| ACKTTZ_RS03380 (KCF3NO3_06640) | upp | 740036..740686 (-) | 651 | WP_034696811.1 | uracil phosphoribosyltransferase | - |
| ACKTTZ_RS03385 (KCF3NO3_06650) | der | 740851..742161 (-) | 1311 | WP_034696809.1 | ribosome biogenesis GTPase Der | - |
| ACKTTZ_RS03395 (KCF3NO3_06660) | - | 742752..743147 (-) | 396 | WP_407847338.1 | transposase | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25472.32 Da Isoelectric Point: 7.7797
>NTDB_id=110833 ACKTTZ_RS03370 WP_034696813.1 738542..739195(+) (comF) [Chryseobacterium sp. KCF3-3]
MILDLLFPNRCIHCNRIIDSELLVCDLCFHQIHFTHYDYFENNPVKEKCSLFFPVENAFSLIQFEEESLSRQIIHELKYR
SREKTGKILANWTTERLNFNNKKPDLLINVPLHPRKLKERGYNQLHVFTETLSSFYNIPFDHQLIKRNYYSKAQALKDKK
HRLESTNMFSITQPITGKHILLIDDVFTTGNTVSSVAWEILNAGDNRVSVLVMAVDI
MILDLLFPNRCIHCNRIIDSELLVCDLCFHQIHFTHYDYFENNPVKEKCSLFFPVENAFSLIQFEEESLSRQIIHELKYR
SREKTGKILANWTTERLNFNNKKPDLLINVPLHPRKLKERGYNQLHVFTETLSSFYNIPFDHQLIKRNYYSKAQALKDKK
HRLESTNMFSITQPITGKHILLIDDVFTTGNTVSSVAWEILNAGDNRVSVLVMAVDI
Nucleotide
Download Length: 654 bp
>NTDB_id=110833 ACKTTZ_RS03370 WP_034696813.1 738542..739195(+) (comF) [Chryseobacterium sp. KCF3-3]
ATGATATTAGACTTATTGTTTCCCAACCGTTGCATTCATTGCAACAGAATCATAGATTCTGAACTTTTGGTCTGTGACCT
TTGTTTTCATCAGATTCATTTTACACACTATGATTATTTTGAGAATAATCCGGTCAAGGAAAAATGCAGTTTATTTTTTC
CGGTTGAAAATGCGTTTTCTTTAATTCAGTTTGAAGAGGAAAGTTTAAGCCGGCAGATTATCCACGAACTGAAATACAGA
AGCAGGGAAAAAACAGGAAAGATTCTTGCCAACTGGACTACAGAACGCCTTAATTTCAATAATAAAAAACCTGATTTACT
AATAAATGTCCCTCTTCATCCAAGGAAACTCAAAGAGCGCGGATATAATCAACTTCATGTATTCACAGAAACTTTATCTT
CATTTTATAACATTCCTTTCGATCATCAATTAATTAAACGAAATTACTATTCAAAAGCTCAGGCTTTAAAAGACAAGAAA
CATAGATTGGAGTCTACGAATATGTTCTCCATCACCCAACCTATTACCGGGAAGCACATCCTCCTGATCGATGATGTTTT
TACTACAGGAAATACTGTTTCATCGGTTGCATGGGAGATTTTGAATGCCGGTGACAATAGAGTGAGTGTATTGGTGATGG
CTGTGGATATTTGA
ATGATATTAGACTTATTGTTTCCCAACCGTTGCATTCATTGCAACAGAATCATAGATTCTGAACTTTTGGTCTGTGACCT
TTGTTTTCATCAGATTCATTTTACACACTATGATTATTTTGAGAATAATCCGGTCAAGGAAAAATGCAGTTTATTTTTTC
CGGTTGAAAATGCGTTTTCTTTAATTCAGTTTGAAGAGGAAAGTTTAAGCCGGCAGATTATCCACGAACTGAAATACAGA
AGCAGGGAAAAAACAGGAAAGATTCTTGCCAACTGGACTACAGAACGCCTTAATTTCAATAATAAAAAACCTGATTTACT
AATAAATGTCCCTCTTCATCCAAGGAAACTCAAAGAGCGCGGATATAATCAACTTCATGTATTCACAGAAACTTTATCTT
CATTTTATAACATTCCTTTCGATCATCAATTAATTAAACGAAATTACTATTCAAAAGCTCAGGCTTTAAAAGACAAGAAA
CATAGATTGGAGTCTACGAATATGTTCTCCATCACCCAACCTATTACCGGGAAGCACATCCTCCTGATCGATGATGTTTT
TACTACAGGAAATACTGTTTCATCGGTTGCATGGGAGATTTTGAATGCCGGTGACAATAGAGTGAGTGTATTGGTGATGG
CTGTGGATATTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
52.315 |
99.539 |
0.521 |