Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ID09_RS01750 Genome accession   NZ_CP008921
Coordinates   341904..342692 (+) Length   262 a.a.
NCBI ID   WP_013730143.1    Uniprot ID   -
Organism   Streptococcus suis 6407     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 336904..347692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS01725 (ID09_01745) - 337210..338169 (-) 960 WP_024381504.1 asparaginase -
  ID09_RS12265 - 338239..339604 (+) 1366 Protein_300 Cof-type HAD-IIB family hydrolase -
  ID09_RS01740 (ID09_01760) - 339620..340072 (-) 453 WP_004195772.1 universal stress protein -
  ID09_RS01745 (ID09_01765) - 340227..341441 (+) 1215 WP_014637482.1 pyridoxal phosphate-dependent aminotransferase -
  ID09_RS01750 (ID09_01770) codY 341904..342692 (+) 789 WP_013730143.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ID09_RS01755 (ID09_01775) - 342694..343245 (+) 552 WP_024376330.1 cysteine hydrolase family protein -
  ID09_RS01760 (ID09_01780) rplS 343663..344010 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  ID09_RS01765 (ID09_01785) - 344197..344871 (+) 675 WP_013730145.1 hydrolase -
  ID09_RS01770 (ID09_01790) gatC 345089..345391 (+) 303 WP_011921930.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  ID09_RS01775 (ID09_01795) gatA 345391..346857 (+) 1467 WP_024381502.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29263.33 Da        Isoelectric Point: 4.6797

>NTDB_id=110832 ID09_RS01750 WP_013730143.1 341904..342692(+) (codY) [Streptococcus suis 6407]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMSYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELAGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=110832 ID09_RS01750 WP_013730143.1 341904..342692(+) (codY) [Streptococcus suis 6407]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCTATTGCTGAACATCTATCAGCTATTATTGATTGCAATTCTTGTATTATTAATAGCGAAGGTGAAGTTTTGG
GATACCACATGAGTTATGAGACAAACAATGATCGTGTGGAAGAATTTTTCCAAAATAAACAATTTCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTATGATACGCAGGTTAACTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTTGAATCACG
ATCGACCTATCCAAATGGTCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGCGCGGCAGTTAATATGGCGGTAAATACGCTATCTTACTCAGA
AATGAAAGCAGTTGCAGCTATTTTGGGTGAATTGGCTGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

58.779

100

0.588
  codY Bacillus subtilis subsp. subtilis str. 168

52.033

93.893

0.489

Multiple sequence alignment