Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACOIYJ_RS00280 Genome accession   NZ_CP184271
Coordinates   53693..55075 (-) Length   460 a.a.
NCBI ID   WP_420064997.1    Uniprot ID   -
Organism   Pectobacterium brasiliense strain CSR2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 48693..60075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOIYJ_RS00250 pepP 48878..50206 (-) 1329 WP_420064995.1 Xaa-Pro aminopeptidase -
  ACOIYJ_RS00255 - 50264..50851 (-) 588 WP_180743112.1 YecA family protein -
  ACOIYJ_RS00260 zapA 51044..51373 (+) 330 WP_180743111.1 cell division protein ZapA -
  ACOIYJ_RS00270 - 51671..52312 (+) 642 WP_420064996.1 5-formyltetrahydrofolate cyclo-ligase -
  ACOIYJ_RS00275 nadR 52309..53562 (-) 1254 WP_180743109.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  ACOIYJ_RS00280 radA 53693..55075 (-) 1383 WP_420064997.1 DNA repair protein RadA Machinery gene
  ACOIYJ_RS00285 serB 55093..56070 (-) 978 WP_180743107.1 phosphoserine phosphatase -
  ACOIYJ_RS00290 - 56227..56925 (+) 699 WP_180743106.1 YtjB family periplasmic protein -
  ACOIYJ_RS00295 - 56975..57910 (-) 936 WP_420064998.1 hypothetical protein -
  ACOIYJ_RS00300 prfC 58211..59800 (+) 1590 WP_225086754.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49564.08 Da        Isoelectric Point: 7.4218

>NTDB_id=1108116 ACOIYJ_RS00280 WP_420064997.1 53693..55075(-) (radA) [Pectobacterium brasiliense strain CSR2]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLSGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=1108116 ACOIYJ_RS00280 WP_420064997.1 53693..55075(-) (radA) [Pectobacterium brasiliense strain CSR2]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAGTGCGGGGCTGACTACCCGCGCTGGCAAGGACAGTGCAGCGC
CTGCCATGCCTGGAACACCATTACCGAAGTGCGTCTGGCCTCTGCTTCCGTATCACGTTCTGACCGTCTCAGCGGCTATG
CGGGCGAGAGTGCTGGCGTCAGCCGGGTACAAAAACTTTCGGAAATCAGCCTTGAAGCCCTGCCCCGTTTTTCTACCGGT
TTTCAGGAGTTTGATCGCGTACTGGGCGGCGGCGTCGTCCCCGGTAGCGCGATTCTTATCGGCGGTAACCCCGGTGCGGG
TAAAAGTACCTTACTGCTGCAAACGCTCTGCAAGCTGTCAGAGAACATGAAAACCCTGTACGTCACTGGGGAAGAATCCT
TGCAGCAGGTGGCGATGCGGGCACACCGCCTTAATCTGCCGACCCAGAATCTCAACATGCTGTCGGAAACCAGCATCGAA
CAAATTTGTCTGATCGCTGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTCATGCACCTCGCCGATAT
TCAATCGTCTCCCGGCAGCGTGGCGCAGGTGCGTGAAACCGCCGCGTATCTGACACGCTTCGCCAAAACACGCGGCGTCG
CCATCGTGATGGTCGGCCACGTCACCAAAGATGGCTCGCTCGCTGGGCCGAAAGTATTAGAACACTGCATCGACTGTTCC
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACTCTGCGCAGCCATAAAAACCGTTTCGGTGCCGTTAACGAGCT
GGGCGTATTCGCGATGACGGAACAAGGACTACGCGAGGTCAGCAATCCATCGGCGATTTTCCTTAGTCGCGGGGACGAAG
TAACGTCCGGTAGTTCCGTGATGGTGGTGTGGGAAGGCACGCGCCCGCTGCTGGTCGAAATTCAGGCGCTAGTGGATCAA
TCGATGATGTCCAACCCGCGCCGCGTGGCGGTCGGGCTGGAACAAAACCGCTTAGCCATTCTGTTGGCAGTGTTGCATCG
CCACGGCGGCTTGCAGATGTCAGATCAGGATGTGTTTGTGAATGTCGTCGGCGGCGTCAAAGTCACCGAAACCAGTGCCG
ACCTGGCACTCCTGTTATCGCTCGTCTCCAGCTTCCGCGATCGCCCGCTGCCACAGGATCTCGTCATCTTCGGTGAAGTC
GGCCTGGCGGGCGAAATTCGCCCGGTTCCCAGTGGACAAGAGCGGATTACCGAAGCCGCCAAGCACGGCTTCAAACGCGC
CATCGTCCCTCATGCCAATATGCCGAAGAAAGCCCCTGCCAGTATGCAGGTGTTCGGCGTGAAAAAGCTGGCCGACGCGC
TGGCAATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.478

100

0.485
  radA Streptococcus mitis NCTC 12261

43.421

99.13

0.43
  radA Streptococcus mitis SK321

43.421

99.13

0.43
  radA Streptococcus pneumoniae Rx1

43.421

99.13

0.43
  radA Streptococcus pneumoniae D39

43.421

99.13

0.43
  radA Streptococcus pneumoniae R6

43.421

99.13

0.43
  radA Streptococcus pneumoniae TIGR4

43.421

99.13

0.43

Multiple sequence alignment