Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACOAK2_RS11225 Genome accession   NZ_CP184264
Coordinates   2192235..2194085 (-) Length   616 a.a.
NCBI ID   WP_237935128.1    Uniprot ID   -
Organism   Aliarcobacter butzleri strain BNI-3166     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2187235..2199085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOAK2_RS11210 (ACOAK2_11210) - 2187660..2188787 (+) 1128 WP_237935125.1 iron-containing alcohol dehydrogenase -
  ACOAK2_RS11215 (ACOAK2_11215) - 2188832..2191084 (-) 2253 WP_260903056.1 methyl-accepting chemotaxis protein -
  ACOAK2_RS11220 (ACOAK2_11220) - 2191210..2192232 (-) 1023 WP_237935127.1 alanine racemase -
  ACOAK2_RS11225 (ACOAK2_11225) uvrC 2192235..2194085 (-) 1851 WP_237935128.1 excinuclease ABC subunit UvrC Machinery gene
  ACOAK2_RS11230 (ACOAK2_11230) - 2194242..2196635 (+) 2394 WP_237935659.1 methyl-accepting chemotaxis protein -
  ACOAK2_RS11235 (ACOAK2_11235) - 2196643..2197305 (-) 663 WP_237935660.1 response regulator transcription factor -
  ACOAK2_RS11240 (ACOAK2_11240) - 2197302..2198366 (-) 1065 WP_260904366.1 hybrid sensor histidine kinase/response regulator -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 72269.43 Da        Isoelectric Point: 9.0416

>NTDB_id=1108115 ACOAK2_RS11225 WP_237935128.1 2192235..2194085(-) (uvrC) [Aliarcobacter butzleri strain BNI-3166]
MNLQEKLQQLPNDAGVYQYFDKNGHLLYIGKAKVLKNRVKSYFKFTPKLQPADKLSPRIYKMISEVESCEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFVDFDEDFPRLDITRRIQKSKSIKYFGPYSTGARDMLDSIYEIVPLVQKKSC
VKGKKACLFHQIQKCLAPCENKISKEEYAKIVENALEYIYNKTKLISKLNEKMIQYSNDFRFEEAMTLRDRIKTIEKSQI
KSGIDLATNEDIDIFAINANNKKAVIVRMFLRDGKLTSSSHDFLKIDNFDEEFEFDYQEAYERAIINYYDNEIPLLPKEI
LIAHELEITNELEEFLHTRFNKKIKLINPKKDKKREIVNIALNNCDELLRIENSKNQTSIYEELKELFNLQTLPYLIESF
DNSHMMGQATVGAMIVWNESLNTFDKKAFRHYNLESKDEYSQMKEMLIRRVESFEKNPAPDLWIIDGGETLLKLAFDIVQ
SVGVNLDIIAIAKEKIDAKAHRAKGKAKDIIHYKTKNGEFKSFNLLTSDKRLQFVQRQRDEAHRFAITFHKKQKRVQDKQ
ISLLQIKGIGEAKIKKLLLYFGEFEKIRKASFDELKTVLNEKDASTILDYFTNFKD

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=1108115 ACOAK2_RS11225 WP_237935128.1 2192235..2194085(-) (uvrC) [Aliarcobacter butzleri strain BNI-3166]
ATGAATTTACAAGAAAAGCTACAACAACTTCCTAATGATGCAGGAGTTTATCAATACTTTGACAAAAATGGTCATTTACT
TTATATAGGAAAAGCAAAAGTTCTAAAAAATAGAGTTAAATCCTATTTTAAATTTACTCCAAAACTACAACCAGCAGATA
AATTAAGTCCAAGAATTTATAAGATGATTAGCGAAGTGGAAAGTTGCGAGTGGATTGTTGTACCAAATGAACATGATGCT
TTAATTCTTGAAAACTCTTTAATCAAACAATTAAAACCAAAATATAATATCTTGCTTCGAGATGATAAAACTTATCCATA
TATTTTTGTAGATTTTGATGAAGATTTTCCAAGGCTTGATATAACTAGAAGAATTCAAAAAAGTAAAAGTATCAAATATT
TTGGACCATACTCAACTGGTGCTAGAGATATGCTTGATTCTATTTATGAAATAGTTCCATTAGTACAAAAGAAATCTTGT
GTAAAAGGTAAAAAAGCCTGTCTTTTCCATCAAATACAAAAATGTTTAGCACCTTGTGAAAATAAAATCTCAAAAGAAGA
GTATGCAAAAATAGTTGAAAATGCTTTAGAGTATATATATAATAAAACAAAACTCATTTCAAAACTAAATGAAAAAATGA
TTCAATATTCAAATGATTTTAGGTTTGAAGAAGCAATGACTTTAAGAGATAGAATAAAAACTATTGAAAAATCTCAAATA
AAATCTGGAATTGATTTAGCAACAAATGAAGATATTGATATTTTTGCAATAAATGCAAATAATAAAAAAGCTGTAATTGT
AAGAATGTTTTTAAGAGATGGAAAATTGACTTCATCAAGCCATGATTTTTTAAAAATAGATAACTTTGATGAAGAGTTCG
AATTTGATTATCAAGAAGCTTATGAAAGAGCAATTATTAACTACTATGATAATGAAATTCCTCTTTTACCAAAAGAGATT
TTGATTGCCCATGAACTTGAAATAACAAATGAATTAGAAGAGTTTTTACATACGAGATTTAATAAAAAAATTAAACTAAT
AAATCCTAAAAAAGATAAAAAAAGAGAGATTGTAAATATAGCTTTAAATAATTGTGATGAATTATTAAGAATTGAAAATT
CAAAAAATCAAACATCAATTTATGAAGAATTAAAAGAGCTGTTTAATCTTCAAACTCTTCCATATTTAATAGAGAGTTTT
GATAACTCTCATATGATGGGACAAGCAACAGTTGGAGCAATGATTGTTTGGAATGAAAGTTTAAATACTTTTGATAAAAA
AGCCTTTAGACATTATAATCTTGAATCAAAAGATGAATACTCTCAAATGAAAGAGATGTTAATAAGAAGAGTTGAAAGTT
TTGAAAAAAATCCCGCTCCTGATTTATGGATAATTGATGGTGGAGAAACTTTACTAAAATTAGCTTTTGATATAGTGCAA
TCTGTTGGTGTAAATCTTGATATTATTGCAATAGCAAAAGAAAAAATTGATGCGAAAGCTCATAGAGCAAAAGGAAAAGC
AAAAGATATAATTCACTATAAAACAAAAAATGGTGAATTTAAAAGTTTTAACTTATTAACAAGTGATAAAAGACTACAAT
TCGTTCAAAGACAAAGGGATGAAGCTCATAGATTTGCAATAACTTTTCATAAAAAGCAAAAAAGAGTACAAGATAAACAA
ATCTCTTTATTACAAATCAAAGGTATTGGTGAAGCAAAAATCAAAAAGCTTCTTTTATATTTTGGAGAATTTGAAAAGAT
TAGAAAAGCATCATTTGATGAACTAAAAACTGTTTTAAATGAAAAAGATGCAAGTACAATTTTAGATTATTTTACTAATT
TCAAGGATTAA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-547)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.907

97.89

0.508

Multiple sequence alignment