Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ID09_RS00130 Genome accession   NZ_CP008921
Coordinates   11784..12566 (+) Length   260 a.a.
NCBI ID   WP_014637252.1    Uniprot ID   -
Organism   Streptococcus suis 6407     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6784..17566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS00110 (ID09_00115) mreD 7632..8120 (+) 489 WP_009908846.1 rod shape-determining protein MreD -
  ID09_RS00115 (ID09_00120) pcsB 8205..9461 (+) 1257 WP_012774880.1 peptidoglycan hydrolase PcsB -
  ID09_RS00120 (ID09_00125) - 9564..10532 (+) 969 WP_024390808.1 ribose-phosphate diphosphokinase -
  ID09_RS00125 (ID09_00130) - 10619..11797 (+) 1179 WP_024382150.1 pyridoxal phosphate-dependent aminotransferase -
  ID09_RS00130 (ID09_00135) recO 11784..12566 (+) 783 WP_014637252.1 DNA repair protein RecO Machinery gene
  ID09_RS00135 (ID09_00140) plsX 12563..13570 (+) 1008 WP_024382149.1 phosphate acyltransferase PlsX -
  ID09_RS00140 (ID09_00145) - 13563..13811 (+) 249 WP_014637254.1 phosphopantetheine-binding protein -
  ID09_RS00145 (ID09_00150) purC 13929..14636 (+) 708 WP_024382148.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30452.95 Da        Isoelectric Point: 5.4193

>NTDB_id=110808 ID09_RS00130 WP_014637252.1 11784..12566(+) (recO) [Streptococcus suis 6407]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRLFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=110808 ID09_RS00130 WP_014637252.1 11784..12566(+) (recO) [Streptococcus suis 6407]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGATGATAAGCTGGTCAAGATTTTTAC
AGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACACGCCTCTAAGTCCAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCATTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTACATCTTGGCCTTGGCCGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCACAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGCTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.721

96.538

0.673

Multiple sequence alignment