Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   ACN6IR_RS05965 Genome accession   NZ_CP184247
Coordinates   1520220..1520921 (+) Length   233 a.a.
NCBI ID   WP_004114219.1    Uniprot ID   -
Organism   Gardnerella vaginalis strain P6465     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1515220..1525921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6IR_RS05945 (ACN6IR_05945) - 1515827..1517398 (-) 1572 WP_420028066.1 type I restriction-modification system subunit M -
  ACN6IR_RS05950 (ACN6IR_05950) - 1517816..1518580 (-) 765 WP_004114222.1 ABC transporter permease -
  ACN6IR_RS05955 (ACN6IR_05955) - 1518594..1519319 (-) 726 WP_004138748.1 ABC transporter permease -
  ACN6IR_RS05960 (ACN6IR_05960) - 1519316..1520080 (-) 765 WP_004105713.1 ABC transporter ATP-binding protein -
  ACN6IR_RS05965 (ACN6IR_05965) scnR 1520220..1520921 (+) 702 WP_004114219.1 response regulator transcription factor Regulator
  ACN6IR_RS05970 (ACN6IR_05970) - 1520928..1522337 (+) 1410 WP_004138681.1 sensor histidine kinase -
  ACN6IR_RS05975 (ACN6IR_05975) - 1522655..1523695 (-) 1041 WP_174143092.1 FAD:protein FMN transferase -
  ACN6IR_RS05980 (ACN6IR_05980) - 1524496..1525473 (+) 978 WP_226913177.1 sugar-binding transcriptional regulator -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26467.58 Da        Isoelectric Point: 4.8946

>NTDB_id=1108040 ACN6IR_RS05965 WP_004114219.1 1520220..1520921(+) (scnR) [Gardnerella vaginalis strain P6465]
MNLNDYLLNKHLLLVDDEQELLDMVVSILNEYGFYNITTAKSIKDAVEATQKLRPELAILDVMLPDGNGFELMKQIKQYS
DCPILFLTACGEDEDKFKGFDLGADDYIVKPFLPKELTFRIMAILRRSYKSENPIVKLKNSQIDFSSAEVIKNNEHIPLT
AKEHDLLSALYRNAGRIVTIDALCEAAWGDNPFGYENSLMAHIRRIREKIELNPSQPVSLVTVKGLGYKLIVE

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1108040 ACN6IR_RS05965 WP_004114219.1 1520220..1520921(+) (scnR) [Gardnerella vaginalis strain P6465]
ATGAATCTGAATGATTATTTATTGAACAAGCATCTGCTGCTTGTTGACGATGAGCAGGAACTTCTAGATATGGTTGTGTC
CATATTAAACGAATACGGTTTTTATAATATAACGACTGCAAAAAGTATAAAAGATGCCGTAGAAGCAACACAAAAATTAC
GTCCAGAATTAGCAATCCTTGATGTTATGCTCCCCGACGGTAATGGGTTTGAACTAATGAAGCAGATAAAACAATATAGT
GATTGTCCTATTTTATTCCTTACTGCTTGCGGTGAAGATGAAGATAAGTTTAAGGGATTTGACTTAGGAGCAGACGATTA
TATTGTAAAGCCGTTTCTTCCAAAAGAGCTAACGTTTCGCATTATGGCAATTTTAAGACGAAGCTACAAGAGCGAAAATC
CCATTGTTAAACTGAAAAATAGTCAGATTGATTTTTCTTCTGCAGAAGTAATAAAAAATAACGAACATATTCCACTTACA
GCCAAAGAACACGATTTGCTTTCTGCTTTATATAGAAATGCGGGACGTATCGTAACAATTGACGCGTTATGTGAAGCTGC
ATGGGGTGATAATCCTTTTGGATATGAAAATTCTTTAATGGCACATATACGTCGTATAAGAGAAAAAATAGAACTCAATC
CATCGCAGCCTGTTTCATTGGTAACAGTAAAAGGTTTAGGATACAAGCTGATTGTGGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(13-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

52.466

95.708

0.502

Multiple sequence alignment