Detailed information    

insolico Bioinformatically predicted

Overview


Name   hns   Type   Regulator
Locus tag   ACN19N_RS14330 Genome accession   NZ_CP184160
Coordinates   2982957..2983283 (-) Length   108 a.a.
NCBI ID   WP_018679168.1    Uniprot ID   V2V4N2
Organism   Acinetobacter sp. LF10     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 2977957..2988283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN19N_RS14310 (ACN19N_14310) - 2978222..2978839 (-) 618 WP_269229024.1 FHA domain-containing protein -
  ACN19N_RS14315 (ACN19N_14315) gspD 2978904..2981162 (-) 2259 WP_420001612.1 type II secretion system secretin GspD -
  ACN19N_RS14320 (ACN19N_14320) - 2981204..2982037 (-) 834 WP_420001613.1 type II secretion system protein N -
  ACN19N_RS14325 (ACN19N_14325) gspN 2982037..2982780 (-) 744 WP_241306802.1 type II secretion system protein N -
  ACN19N_RS14330 (ACN19N_14330) hns 2982957..2983283 (-) 327 WP_018679168.1 H-NS family nucleoid-associated regulatory protein Regulator
  ACN19N_RS14335 (ACN19N_14335) - 2983681..2984118 (-) 438 WP_420001614.1 acyl-CoA thioesterase -
  ACN19N_RS14340 (ACN19N_14340) - 2984126..2985319 (-) 1194 WP_269229028.1 heme biosynthesis protein HemY -
  ACN19N_RS14345 (ACN19N_14345) - 2985327..2986154 (-) 828 WP_420001615.1 hypothetical protein -
  ACN19N_RS14350 (ACN19N_14350) - 2986151..2986927 (-) 777 WP_293743836.1 uroporphyrinogen-III synthase -
  ACN19N_RS14355 (ACN19N_14355) hemC 2986927..2987844 (-) 918 WP_420001616.1 hydroxymethylbilane synthase -

Sequence


Protein


Download         Length: 108 a.a.        Molecular weight: 12384.13 Da        Isoelectric Point: 5.0355

>NTDB_id=1108028 ACN19N_RS14330 WP_018679168.1 2982957..2983283(-) (hns) [Acinetobacter sp. LF10]
MKPDISDLSVEDLKRLQVEAEALILSKKDQAIEDAYNQIIAIAEAVGFSVEELLELGEQKRKKTTRKAVEPRYRNKNNTE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1108028 ACN19N_RS14330 WP_018679168.1 2982957..2983283(-) (hns) [Acinetobacter sp. LF10]
ATGAAACCAGATATTAGTGATTTATCTGTGGAAGATTTAAAACGTTTACAGGTAGAAGCAGAAGCTTTAATTTTAAGTAA
AAAAGATCAAGCAATTGAAGATGCTTATAATCAAATTATTGCGATTGCTGAAGCCGTTGGTTTTAGCGTTGAAGAATTAT
TAGAGTTAGGTGAGCAAAAGCGTAAGAAAACAACGCGCAAAGCAGTAGAACCACGCTACCGTAATAAAAATAATACAGAA
GAAACTTGGACTGGTCGTGGTAAACAGCCACGTTGGTTAGTTGCTGAATTAGAAAAAGGCGCAAAACTTGAAGATTTTCT
AATCTAA

Domains


Predicted by InterproScan.

(13-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB V2V4N2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

88.889

100

0.889


Multiple sequence alignment