Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ACN19N_RS13820 Genome accession   NZ_CP184160
Coordinates   2866844..2869084 (+) Length   746 a.a.
NCBI ID   WP_420002396.1    Uniprot ID   -
Organism   Acinetobacter sp. LF10     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2861844..2874084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN19N_RS13795 (ACN19N_13795) lnt 2862218..2863777 (+) 1560 WP_420001579.1 apolipoprotein N-acyltransferase -
  ACN19N_RS13800 (ACN19N_13800) - 2863876..2864262 (-) 387 WP_269228952.1 hypothetical protein -
  ACN19N_RS13805 (ACN19N_13805) - 2864290..2864634 (-) 345 WP_269228953.1 hypothetical protein -
  ACN19N_RS13810 (ACN19N_13810) gspG 2864899..2865468 (-) 570 WP_420001580.1 type II secretion system major pseudopilin GspG -
  ACN19N_RS13815 (ACN19N_13815) gspF 2865492..2866697 (-) 1206 WP_269228955.1 type II secretion system inner membrane protein GspF -
  ACN19N_RS13820 (ACN19N_13820) priA 2866844..2869084 (+) 2241 WP_420002396.1 primosomal protein N' Machinery gene
  ACN19N_RS13825 (ACN19N_13825) - 2869206..2871023 (+) 1818 WP_420001581.1 cation:proton antiporter -
  ACN19N_RS13830 (ACN19N_13830) - 2871143..2872018 (+) 876 WP_269228957.1 Hsp33 family molecular chaperone HslO -
  ACN19N_RS13835 (ACN19N_13835) - 2872132..2872743 (+) 612 WP_269228958.1 LysE family translocator -
  ACN19N_RS13840 (ACN19N_13840) - 2872885..2873829 (+) 945 WP_420001582.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 84703.68 Da        Isoelectric Point: 8.5526

>NTDB_id=1108024 ACN19N_RS13820 WP_420002396.1 2866844..2869084(+) (priA) [Acinetobacter sp. LF10]
MNEAYMPSQNSNAILYRIRVAIPVYVYDTFDYTVSAEQYDQAQVGARVAISFGQQNLIGIITEKVDPNDLFTGQFKLKAI
TELLDQESILDQQVLTLLTWSAQYYQFPIGEVMQSALPSLLRQGRALDILFHLWKIIPYDDPNALLKRSQKQYDAYQVLK
LHPHGSTENVLNLSGVETSTLKALEKKGLVECCLEPHDFTPTPVQLAQVPLTPNKDQKKAIQQILKAQHHYQAFLLDGLT
GSGKTEVYLQVMHEVLKQGKQILVLVPEIGLTPQTVARFKSRFHCDVALLHSGLNDSKRLQAWQHAQTGKASIIIGTRSA
IYTPLPHLGLIILDEEHDLSYKQQEGFRYHTRDVALYRGHLQGCPVILGSATPSIDSYHLVESGKLHLLELNQRAGIAVL
PKMYVVDLKIAKKKHGLSQTLIEQIKHTLERKEQVLIFLNRRGYAPILMCESCGWQANCPHCDAHFTLHSQPYHYLHCHH
CGTINRLPDHCPACQKQSLKTIGAGTAKLEEHLQELFPHHEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKG
HHFPHVTLVAILDIDAGLLSVDPRAPERTAQLIVQVAGRAGRGEHKGSVYLQSLRPDHPMLTTLIEHDYRTVAKQMLADR
KVALLPPYRYAVLVRVESKDRDYSQQFLADIAQQLRVIAGDIVDIWGPIPAPMERKAGRYRAHMVILSTDRAKLHFYLRQ
WWQQVVHLPRQHLLRLSIDVDPQEFS

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=1108024 ACN19N_RS13820 WP_420002396.1 2866844..2869084(+) (priA) [Acinetobacter sp. LF10]
ATGAATGAAGCCTATATGCCTAGCCAAAATTCTAACGCTATTTTGTACCGTATTCGAGTTGCAATACCCGTTTATGTGTA
TGACACGTTTGACTATACGGTCAGTGCTGAGCAATACGATCAAGCACAGGTTGGCGCACGTGTTGCGATTTCATTTGGAC
AGCAAAATCTGATTGGAATCATTACTGAAAAAGTTGATCCCAATGACCTATTCACAGGGCAATTCAAACTTAAGGCCATC
ACAGAATTACTCGATCAGGAATCAATTCTAGATCAACAAGTTTTAACTTTGTTGACATGGTCAGCCCAATATTACCAATT
CCCGATTGGTGAAGTGATGCAAAGTGCCCTGCCCAGCTTATTAAGACAAGGGCGCGCCTTAGACATTCTGTTTCATTTAT
GGAAAATCATCCCATACGATGACCCAAATGCCTTATTAAAACGCTCTCAAAAACAATATGATGCCTATCAGGTTTTAAAG
CTTCATCCACATGGTTCTACGGAGAATGTGCTCAATCTTAGTGGTGTAGAAACCTCAACTTTAAAGGCATTAGAAAAAAA
GGGCTTGGTTGAATGTTGTCTAGAACCGCATGATTTCACCCCAACGCCTGTGCAGCTGGCTCAAGTGCCTTTGACACCAA
ACAAAGATCAAAAGAAAGCCATTCAACAGATCCTCAAAGCACAGCATCACTATCAAGCATTTTTACTCGATGGTTTGACT
GGTAGTGGCAAAACTGAAGTCTATTTGCAAGTCATGCATGAGGTGCTAAAACAAGGCAAACAAATATTGGTACTGGTACC
TGAAATTGGCCTAACCCCACAAACGGTCGCCCGTTTTAAATCACGGTTTCATTGCGATGTGGCTTTACTGCACTCAGGCT
TAAATGACTCAAAACGTTTACAAGCATGGCAACATGCACAAACGGGCAAAGCTTCCATTATTATTGGCACACGTTCAGCA
ATCTATACCCCACTGCCGCATTTGGGCTTAATCATTCTAGATGAGGAACATGATCTTTCGTATAAGCAGCAAGAAGGTTT
CCGTTACCATACCCGTGATGTGGCGTTGTATCGTGGTCACTTGCAAGGCTGTCCCGTCATTCTCGGTTCAGCCACCCCAA
GTATCGACAGTTATCATTTGGTAGAATCGGGCAAGTTACATCTACTTGAGTTGAATCAGCGTGCGGGCATCGCTGTACTG
CCGAAAATGTATGTGGTGGATTTAAAAATCGCAAAAAAGAAGCACGGACTCAGCCAAACACTCATCGAACAAATCAAGCA
TACGTTAGAACGTAAAGAACAAGTACTGATCTTTTTAAATCGACGCGGTTATGCGCCAATTCTGATGTGTGAAAGCTGTG
GCTGGCAAGCCAACTGCCCACACTGTGATGCGCACTTTACCCTACATTCACAGCCTTATCATTATTTACATTGCCATCAT
TGCGGTACCATCAATCGTCTGCCCGATCATTGTCCTGCATGTCAGAAACAAAGCTTAAAAACTATTGGAGCAGGAACAGC
AAAACTTGAAGAACATTTACAGGAGCTGTTCCCACATCATGAAGTGATTCGGGTCGATCGTGACAGCACCAGTCGAGTCG
GTAGCTGGCAAAAAATCTATGATCGCATTCAGCAAAATAAACCGAGCATTTTGTTGGGCACACAAATGCTGGCAAAAGGT
CATCATTTTCCGCATGTTACCCTTGTTGCGATTTTAGATATTGATGCAGGACTGCTCAGTGTTGATCCACGTGCACCTGA
GCGAACCGCACAGCTGATTGTGCAGGTCGCTGGCCGTGCTGGTCGTGGTGAGCATAAAGGCAGTGTTTATTTGCAAAGTT
TGCGTCCAGATCATCCGATGCTGACCACATTGATTGAACATGATTATCGTACTGTCGCCAAACAAATGCTAGCTGATCGC
AAAGTTGCCCTGCTACCGCCTTATCGTTATGCAGTATTGGTTCGGGTTGAATCTAAAGATCGCGACTATAGCCAACAATT
TTTAGCTGATATTGCCCAACAATTGAGAGTGATAGCAGGCGATATCGTGGATATTTGGGGGCCCATTCCCGCACCGATGG
AACGTAAAGCTGGTCGTTATCGCGCGCATATGGTGATTTTATCAACTGATCGCGCCAAGCTGCACTTTTATTTACGTCAA
TGGTGGCAACAAGTGGTACATTTACCACGTCAGCATTTGCTCAGACTCTCGATAGATGTTGATCCACAAGAGTTTAGTTA
A

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(215-376)

3DNA-binding domain (3BD) (PriA_3primeBD)

(19-118)

Primosomal protein N C-terminal domain (PriA_C)

(647-742)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

82.993

98.525

0.818

Multiple sequence alignment