Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACLB5D_RS21490 Genome accession   NZ_CP184143
Coordinates   4366678..4367307 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain F11     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4361678..4372307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLB5D_RS21470 ycbZ 4362079..4363839 (-) 1761 WP_000156526.1 AAA family ATPase -
  ACLB5D_RS21475 matP 4364025..4364477 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACLB5D_RS21480 ompA 4364553..4365593 (-) 1041 WP_021544773.1 porin OmpA -
  ACLB5D_RS21485 sulA 4365950..4366459 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACLB5D_RS21490 sxy/tfoX 4366678..4367307 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACLB5D_RS21495 yccS 4367270..4369432 (-) 2163 WP_000875061.1 YccS family putative transporter -
  ACLB5D_RS21500 yccF 4369442..4369888 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACLB5D_RS21505 helD 4370011..4372065 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1107975 ACLB5D_RS21490 WP_000839153.1 4366678..4367307(+) (sxy/tfoX) [Escherichia coli strain F11]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1107975 ACLB5D_RS21490 WP_000839153.1 4366678..4367307(+) (sxy/tfoX) [Escherichia coli strain F11]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment