Detailed information    

insolico Bioinformatically predicted

Overview


Name   sxy/tfoX   Type   Regulator
Locus tag   ACN9LG_RS08290 Genome accession   NZ_CP184114
Coordinates   1713268..1713897 (+) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain AZ 191     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context


Location: 1708268..1718897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN9LG_RS08270 (ACN9LG_08270) ycbZ 1708658..1710418 (-) 1761 WP_000156502.1 AAA family ATPase -
  ACN9LG_RS08275 (ACN9LG_08275) matP 1710604..1711056 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ACN9LG_RS08280 (ACN9LG_08280) ompA 1711132..1712184 (-) 1053 WP_001346420.1 porin OmpA -
  ACN9LG_RS08285 (ACN9LG_08285) sulA 1712540..1713049 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ACN9LG_RS08290 (ACN9LG_08290) sxy/tfoX 1713268..1713897 (+) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACN9LG_RS08295 (ACN9LG_08295) yccS 1713860..1716022 (-) 2163 WP_000875041.1 YccS family putative transporter -
  ACN9LG_RS08300 (ACN9LG_08300) yccF 1716032..1716478 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACN9LG_RS08305 (ACN9LG_08305) helD 1716601..1718655 (+) 2055 WP_001295938.1 DNA helicase IV -

Sequence


Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=1107888 ACN9LG_RS08290 WP_000839151.1 1713268..1713897(+) (sxy/tfoX) [Escherichia coli strain AZ 191]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1107888 ACN9LG_RS08290 WP_000839151.1 1713268..1713897(+) (sxy/tfoX) [Escherichia coli strain AZ 191]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995


Multiple sequence alignment