Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HZ99_RS15480 Genome accession   NZ_CP008896
Coordinates   3462777..3463142 (-) Length   121 a.a.
NCBI ID   WP_038444122.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain UK4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3457777..3468142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ99_RS15470 (HZ99_15845) - 3460180..3462231 (-) 2052 WP_038444118.1 methyl-accepting chemotaxis protein -
  HZ99_RS15475 (HZ99_15850) - 3462228..3462764 (-) 537 WP_038444120.1 chemotaxis protein CheW -
  HZ99_RS15480 (HZ99_15855) pilH 3462777..3463142 (-) 366 WP_038444122.1 twitching motility response regulator PilH Machinery gene
  HZ99_RS15485 (HZ99_15860) pilG 3463188..3463595 (-) 408 WP_038444124.1 twitching motility response regulator PilG Regulator
  HZ99_RS15490 (HZ99_15865) gshB 3463835..3464788 (+) 954 WP_038444126.1 glutathione synthase -
  HZ99_RS15495 (HZ99_15870) - 3464866..3465765 (+) 900 WP_038444128.1 energy transducer TonB -
  HZ99_RS15500 (HZ99_15875) - 3465915..3466484 (+) 570 WP_038444130.1 YqgE/AlgH family protein -
  HZ99_RS15505 (HZ99_15880) ruvX 3466484..3466921 (+) 438 WP_005792259.1 Holliday junction resolvase RuvX -
  HZ99_RS15510 (HZ99_15885) pyrR 3467004..3467510 (+) 507 WP_038444133.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13448.62 Da        Isoelectric Point: 5.2420

>NTDB_id=110769 HZ99_RS15480 WP_038444122.1 3462777..3463142(-) (pilH) [Pseudomonas fluorescens strain UK4]
MARVLIVDDSPTEMYKLTGMLEKHGHQVLKAENGADGVALARQEKPDAVLMDIVMPGLNGFQATRQLSKEPETNGIPIII
VTTKDQETDRIWAERQGAKAYLTKPVEEDKLIEVLKLVLKP

Nucleotide


Download         Length: 366 bp        

>NTDB_id=110769 HZ99_RS15480 WP_038444122.1 3462777..3463142(-) (pilH) [Pseudomonas fluorescens strain UK4]
ATGGCACGCGTTCTGATCGTCGACGATTCACCGACTGAAATGTACAAACTGACCGGCATGCTGGAAAAGCATGGCCACCA
GGTCCTCAAGGCCGAGAATGGTGCCGATGGCGTGGCCCTGGCCCGCCAGGAAAAGCCCGATGCCGTCCTGATGGATATCG
TCATGCCCGGCCTCAATGGCTTCCAGGCCACGCGCCAGTTATCCAAGGAGCCGGAAACCAACGGGATCCCGATCATCATC
GTCACCACCAAGGACCAGGAAACCGACAGGATCTGGGCCGAACGCCAGGGTGCCAAGGCCTACCTGACCAAACCGGTGGA
AGAAGACAAGCTGATCGAAGTCCTGAAACTGGTGCTCAAGCCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

37.5

99.174

0.372

Multiple sequence alignment