Detailed information NTG0110760

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: HZ99_RS12585
• Genome accession: NZ_CP008896
• Coordinates: 2855246..2857810 (-)
• Length: 854 a.a.
• NCBI ID: WP_038443453.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain UK4
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2850246..2862810

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HZ99_RS12530 (HZ99_12830)	yacG	2850463..2850666 (+)	204	WP_038443442.1	DNA gyrase inhibitor YacG	-
HZ99_RS12535 (HZ99_12835)	-	2850663..2850878 (-)	216	WP_038443443.1	hypothetical protein	-
HZ99_RS12540 (HZ99_12840)	-	2850942..2851631 (-)	690	WP_038443445.1	energy-coupling factor ABC transporter permease	-
HZ99_RS12545 (HZ99_12845)	-	2851628..2852095 (-)	468	WP_038443446.1	hypothetical protein	-
HZ99_RS12550 (HZ99_12850)	-	2852198..2852827 (+)	630	WP_038443448.1	DUF1780 domain-containing protein	-
HZ99_RS12555	-	2852867..2853040 (+)	174	WP_038443450.1	DUF3094 family protein	-
HZ99_RS12560 (HZ99_12860)	-	2853101..2854399 (+)	1299	WP_038443451.1	NAD(P)/FAD-dependent oxidoreductase	-
HZ99_RS12585 (HZ99_12885)	clpC	2855246..2857810 (-)	2565	WP_038443453.1	ATP-dependent chaperone ClpB	Regulator
HZ99_RS12590 (HZ99_12890)	pgeF	2857965..2858690 (-)	726	WP_038443455.1	peptidoglycan editing factor PgeF	-
HZ99_RS12595 (HZ99_12895)	rluD	2858687..2859649 (-)	963	WP_029292014.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
HZ99_RS12600 (HZ99_12900)	-	2859799..2860824 (+)	1026	WP_038443456.1	outer membrane protein assembly factor BamD	-
HZ99_RS12605 (HZ99_12905)	-	2860950..2861180 (+)	231	WP_038443458.1	PP0621 family protein	-
HZ99_RS12610 (HZ99_12910)	thiO	2861286..2862386 (-)	1101	WP_038443460.1	glycine oxidase ThiO	-

Sequence

Protein

• Length: 854 a.a.
• Molecular weight: 95412.92 Da
• Isoelectric Point: 5.2053

>NTDB_id=110760 HZ99_RS12585 WP_038443453.1 2855246..2857810(-) (clpC) [Pseudomonas fluorescens strain UK4]
MRIDRLTSKLQLALSDSQSLAVGLDHSAIEPAHLMQALLEQQGGSIKPLLMQVGFDVNSLRKELSKELDQLPKIQNPTGD
VNMSQDLARLLNQADRLAQQKGDQFISSELVLLAAMDDNSKLGKLLLGQGVSKKALENAINNLRGGEAVNDPNHEESRQA
LDKYTVDLTKRAEDGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIAEGLAQRIINGEVPDGLKGKRLLSL
DMGALIAGAKFRGEFEERLKSLLNELSKQEGQIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLNEYR
QYIEKDAALERRFQKVLVEEPSEEDTIAILRGLKERYEVHHRVAITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASR
IRMEIDSKPEVLDRLERRLIQLKVESQALKKEDDDAAKKRLEKLQEEIVRLEREYSDLEEIWTSEKAEVQGSAQIQQKIE
QSRQELEAARRKGDLNRMAELQYGVIPDLERSLQMVDQHGHSENQLLRSKVTEEEIAEVVSKWTGIPVSKMLEGERDKLL
RMESLLHQRVIGQEEAVVAVSNAVRRSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALAEFLFDTEEAMVRIDMSEFMEK
HSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNVLLQVLEDGRLTDSHGRTVDFRNTVIVMTSNL
GSVQIQEMVGDREGQRAAVMDALTSHFRPEFINRVDEVVIFEPLARDQIAGITEIQLGRLRSRLAERELVLELSSEALDK
LIAVGYDPVYGARPLKRAIQRWIENPLAQLILSGSFMPGTHVKAAVENDEIVFH

Nucleotide

• Length: 2565 bp

>NTDB_id=110760 HZ99_RS12585 WP_038443453.1 2855246..2857810(-) (clpC) [Pseudomonas fluorescens strain UK4]
ATGCGTATTGATCGTTTAACCAGCAAATTACAATTGGCGTTATCGGATTCCCAATCTCTGGCAGTTGGCCTCGACCATTC
GGCCATCGAGCCCGCGCACTTGATGCAGGCGCTCCTCGAACAACAGGGTGGTTCTATAAAACCCCTGTTGATGCAGGTGG
GCTTCGACGTCAACAGCTTGCGCAAGGAGTTGAGCAAAGAGCTCGACCAACTGCCGAAAATCCAGAATCCGACGGGCGAC
GTAAATATGTCCCAGGATTTGGCACGCCTGCTCAACCAGGCAGATCGCCTAGCCCAGCAGAAGGGTGACCAGTTCATCTC
CAGCGAACTGGTACTGCTCGCTGCCATGGATGACAACAGCAAGCTTGGCAAGTTGTTGCTGGGCCAGGGTGTGAGCAAAA
AGGCCCTGGAAAATGCCATCAACAACCTGCGCGGCGGCGAGGCGGTGAATGACCCCAACCATGAGGAGTCGCGCCAGGCC
CTGGACAAGTACACCGTCGATCTGACCAAGCGCGCCGAAGACGGCAAGTTGGATCCGGTAATCGGCCGTGATGACGAAAT
TCGTCGCACCATTCAGGTCTTGCAGCGTCGCACCAAGAATAACCCGGTGCTGATCGGTGAACCTGGTGTGGGTAAAACCG
CCATCGCCGAAGGCCTGGCCCAGCGCATCATTAATGGTGAGGTGCCGGACGGCCTTAAGGGCAAGCGCTTGCTGTCCCTG
GATATGGGGGCGTTGATCGCCGGTGCCAAGTTCCGTGGTGAGTTCGAAGAGCGCCTCAAATCCTTGCTTAACGAGTTGTC
GAAGCAGGAAGGGCAGATCATTCTGTTTATCGACGAACTGCACACTATGGTCGGCGCCGGTAAGGGCGAAGGCTCGATGG
ACGCGGGCAATATGCTCAAGCCTGCATTGGCACGGGGTGAGTTGCACTGTGTGGGTGCTACCACGCTCAACGAGTACCGC
CAGTACATTGAAAAAGACGCGGCCCTTGAGCGTCGTTTCCAGAAAGTCCTGGTGGAAGAGCCGAGCGAGGAAGACACCAT
CGCGATCCTGCGTGGCCTGAAAGAGCGGTATGAGGTCCACCACCGCGTGGCGATCACCGACGGCGCGATCATTGCGGCGG
CCAAATTGAGCCATCGTTACATCACTGATCGTCAGTTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGG
ATTCGCATGGAGATCGATTCCAAGCCTGAGGTGTTGGATCGCCTGGAGCGCCGTCTGATTCAACTGAAAGTCGAATCCCA
GGCGCTGAAGAAAGAGGACGATGACGCGGCGAAGAAACGCCTGGAAAAACTCCAGGAAGAAATCGTGCGCCTGGAACGGG
AGTATTCGGACCTGGAAGAAATCTGGACCTCGGAAAAAGCCGAAGTACAGGGTTCCGCACAGATCCAGCAAAAGATCGAA
CAGTCGCGCCAGGAACTGGAAGCTGCACGCCGTAAAGGCGACCTGAACCGCATGGCAGAGTTGCAGTACGGGGTGATCCC
GGACCTGGAGCGCAGCCTGCAAATGGTCGACCAGCATGGCCATAGCGAGAATCAGTTGTTGCGCAGCAAGGTGACCGAGG
AAGAAATTGCCGAGGTGGTCTCCAAATGGACCGGCATTCCAGTATCGAAGATGCTGGAAGGGGAGCGTGACAAACTGTTG
CGCATGGAAAGCCTGTTGCACCAGCGCGTGATTGGCCAGGAAGAGGCCGTGGTGGCGGTGTCCAATGCGGTACGGCGTTC
CCGGGCCGGTTTGTCCGACCCAAATCGCCCAAGTGGCTCGTTCATGTTCCTCGGCCCGACCGGTGTGGGTAAGACCGAGT
TGTGCAAGGCCCTGGCCGAGTTCCTCTTTGATACAGAAGAGGCGATGGTGCGCATTGATATGTCCGAGTTCATGGAGAAA
CACTCCGTGGCTCGTTTGATCGGAGCGCCACCGGGCTATGTGGGCTATGAGGAAGGCGGCTACCTGACCGAGGCCGTACG
GCGCAAGCCTTACTCGGTGATACTGCTGGATGAGGTCGAGAAGGCCCACCCGGATGTGTTCAACGTGTTGCTGCAAGTGT
TGGAAGATGGCCGGCTGACGGACAGCCACGGGCGGACCGTAGACTTCCGTAATACGGTGATTGTGATGACCTCCAACCTG
GGCTCGGTACAGATCCAGGAAATGGTCGGGGATCGTGAAGGCCAGCGTGCTGCGGTAATGGACGCACTGACCAGTCACTT
CCGCCCGGAATTTATCAACCGGGTCGATGAAGTGGTGATCTTCGAGCCGCTGGCGCGGGATCAGATCGCCGGCATTACCG
AGATCCAATTGGGTCGCCTGCGCAGTCGTCTGGCAGAGCGCGAGCTGGTGCTGGAACTGAGCAGCGAGGCCTTGGACAAG
TTGATCGCCGTCGGCTACGACCCGGTGTATGGCGCACGGCCTTTGAAACGTGCGATCCAGCGCTGGATCGAGAACCCGCT
GGCGCAATTGATCCTGTCGGGCAGCTTTATGCCGGGGACCCACGTCAAGGCTGCCGTGGAAAACGACGAAATCGTCTTCC
ACTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (764-843)

• ATPase family associated with various cellular activities (AAA) (AAA) (203-335)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-758)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-68)

• AAA lid domain (AAA_lid_9) (342-445)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	44.494	100	0.464
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.334	100	0.433
clpC	Lactococcus lactis subsp. cremoris KW2	46.542	81.265	0.378