Detailed information NTG0110733

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: HZ99_RS07155
• Genome accession: NZ_CP008896
• Coordinates: 1681323..1682345 (-)
• Length: 340 a.a.
• NCBI ID: WP_038442019.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain UK4
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1676323..1687345

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HZ99_RS07115 (HZ99_07320)	-	1676901..1677212 (+)	312	WP_038442012.1	hypothetical protein	-
HZ99_RS07120 (HZ99_07325)	-	1677502..1677714 (+)	213	WP_007905882.1	cold-shock protein	-
HZ99_RS07125 (HZ99_07330)	-	1677785..1678105 (-)	321	WP_038442013.1	I78 family peptidase inhibitor	-
HZ99_RS07130 (HZ99_07335)	-	1678255..1678560 (-)	306	WP_038442014.1	hypothetical protein	-
HZ99_RS07135 (HZ99_07340)	-	1678696..1678908 (+)	213	WP_038442015.1	hypothetical protein	-
HZ99_RS07140 (HZ99_07345)	-	1678928..1679956 (-)	1029	WP_038442016.1	nucleoside hydrolase	-
HZ99_RS07145 (HZ99_07350)	rbsD	1679985..1680386 (-)	402	WP_038442017.1	D-ribose pyranase	-
HZ99_RS07150 (HZ99_07355)	rbsK	1680383..1681300 (-)	918	WP_038442018.1	ribokinase	-
HZ99_RS07155 (HZ99_07360)	cytR	1681323..1682345 (-)	1023	WP_038442019.1	LacI family DNA-binding transcriptional regulator	Regulator
HZ99_RS07160 (HZ99_07365)	-	1682349..1683326 (-)	978	WP_038442020.1	ABC transporter permease	-
HZ99_RS07165 (HZ99_07370)	-	1683323..1684876 (-)	1554	WP_038442021.1	sugar ABC transporter ATP-binding protein	-
HZ99_RS07170 (HZ99_07375)	-	1684935..1685894 (-)	960	WP_038442022.1	sugar ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 340 a.a.
• Molecular weight: 36421.89 Da
• Isoelectric Point: 7.3711

>NTDB_id=110733 HZ99_RS07155 WP_038442019.1 1681323..1682345(-) (cytR) [Pseudomonas fluorescens strain UK4]
MATIKDVAALAGISYTTVSHVVNRTRPVSEPVRLKVEAAIKHLDYVPSAVARSLKAKTTATIGLLVPNSLNPYFAELARG
IEDYCERNGYCVILCNSDDNAEKQRNYLRVLLEKRVDGLIVTSVGGDDSGLATGLKAVRTPMVIVDRGLEGVDVDLVRID
HEQGAYLATRHLLALGHRDIACIGGPAHTRVAQMRLAGYQRALLEAGIAVPASRVLESDFTSTGGYAAAVQLLADNPPSA
IFAGNDMIGFGVLRAAAERNLRVPAELSVIGFDDIQMSRYVYPALTTVGQSILQLGETAAELLLRRIATPQLPADQRIVT
PSIVLRESTAPLAAVFASNR

Nucleotide

• Length: 1023 bp

>NTDB_id=110733 HZ99_RS07155 WP_038442019.1 1681323..1682345(-) (cytR) [Pseudomonas fluorescens strain UK4]
ATGGCAACCATCAAGGACGTGGCAGCGCTCGCGGGCATTTCCTACACCACAGTGTCCCATGTGGTGAACAGGACGCGCCC
GGTCAGTGAGCCCGTACGGCTCAAGGTCGAAGCGGCGATCAAGCATCTGGATTACGTACCCAGCGCGGTCGCCCGTTCGC
TGAAGGCCAAGACCACCGCGACCATCGGCCTGTTGGTGCCCAACAGCCTCAACCCGTATTTCGCAGAACTGGCCAGGGGC
ATCGAGGACTACTGCGAGCGCAATGGTTACTGCGTGATCCTGTGCAATTCCGACGATAACGCCGAGAAGCAGCGCAACTA
TTTACGGGTGTTGCTGGAGAAACGTGTCGACGGCTTGATCGTCACCTCGGTAGGAGGCGATGACAGTGGCCTGGCCACGG
GCCTCAAGGCGGTGCGCACGCCCATGGTTATTGTCGACCGGGGCCTGGAGGGGGTTGATGTGGACCTGGTGCGCATCGAT
CACGAGCAGGGCGCGTACCTGGCGACTCGCCACTTGCTGGCGCTGGGGCACCGGGATATTGCCTGCATCGGTGGACCGGC
GCACACGCGCGTCGCGCAGATGCGCCTGGCCGGCTATCAGCGGGCGCTGCTGGAGGCTGGGATCGCTGTGCCTGCCAGTC
GCGTGCTGGAAAGCGATTTCACCAGTACCGGCGGTTATGCGGCGGCGGTGCAGTTGCTTGCAGACAATCCGCCCAGCGCG
ATATTCGCTGGCAACGACATGATCGGTTTCGGTGTGTTGCGCGCGGCCGCCGAGCGCAACCTGCGAGTGCCTGCCGAGCT
GTCGGTGATTGGTTTTGATGACATTCAAATGAGCCGCTATGTCTATCCCGCGTTGACCACCGTAGGCCAGTCGATCCTGC
AATTGGGAGAGACGGCGGCGGAGCTGTTATTGCGACGGATTGCGACTCCGCAATTGCCGGCTGACCAGCGCATTGTCACG
CCGAGCATTGTCTTGCGTGAGTCAACGGCGCCGTTGGCTGCCGTGTTTGCCTCAAACCGCTGA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (169-329)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	36.937	97.941	0.362