Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ACLKMZ_RS14415 Genome accession   NZ_CP183909
Coordinates   2968599..2968925 (-) Length   108 a.a.
NCBI ID   WP_067761817.1    Uniprot ID   A0A1A7RE14
Organism   Acinetobacter gandensis strain M1_NDM_tet(X3)     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2963599..2973925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKMZ_RS14400 gspD 2964724..2966779 (-) 2056 Protein_2776 type II secretion system secretin GspD -
  ACLKMZ_RS14405 - 2966822..2967667 (-) 846 WP_411691780.1 type II secretion system protein N -
  ACLKMZ_RS14410 gspN 2967688..2968431 (-) 744 WP_180057761.1 type II secretion system protein N -
  ACLKMZ_RS14415 hns 2968599..2968925 (-) 327 WP_067761817.1 H-NS family nucleoid-associated regulatory protein Regulator
  ACLKMZ_RS14420 - 2969067..2969495 (-) 429 WP_067761385.1 acyl-CoA thioesterase -
  ACLKMZ_RS14425 - 2969507..2970700 (-) 1194 WP_180057759.1 heme biosynthesis protein HemY -
  ACLKMZ_RS14430 - 2970706..2971542 (-) 837 WP_067761388.1 hypothetical protein -
  ACLKMZ_RS14435 - 2971539..2972318 (-) 780 WP_067761391.1 uroporphyrinogen-III synthase -
  ACLKMZ_RS14440 hemC 2972322..2973239 (-) 918 WP_411691778.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12226.00 Da        Isoelectric Point: 6.4307

>NTDB_id=1107180 ACLKMZ_RS14415 WP_067761817.1 2968599..2968925(-) (hns) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
MMPDISNLSVEELKKLQVEAEALIASKKDQAIEDAYNRILEIAENLDLTVEQILESGANKRKKSTRKAVEPRYRSKANAA
DTWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1107180 ACLKMZ_RS14415 WP_067761817.1 2968599..2968925(-) (hns) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
ATTATGCCTGATATTAGCAATCTATCAGTTGAAGAGTTAAAGAAATTACAAGTTGAAGCGGAAGCTTTAATTGCGTCTAA
AAAAGACCAAGCGATTGAAGATGCGTATAATCGTATTTTAGAAATTGCTGAAAACTTAGATTTAACCGTAGAGCAGATTC
TTGAATCTGGCGCGAACAAACGTAAAAAATCAACACGTAAAGCTGTTGAGCCACGTTACCGTAGTAAAGCGAATGCTGCT
GATACTTGGACAGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAGCTTGAAAAAGGCGCAAAACTTGAAGACTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A7RE14

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

81.481

100

0.815

Multiple sequence alignment