Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ACLKMZ_RS14080 Genome accession   NZ_CP183909
Coordinates   2890718..2892940 (+) Length   740 a.a.
NCBI ID   WP_180056268.1    Uniprot ID   -
Organism   Acinetobacter gandensis strain M1_NDM_tet(X3)     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2885718..2897940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKMZ_RS14055 lnt 2886053..2887612 (+) 1560 WP_411691232.1 apolipoprotein N-acyltransferase -
  ACLKMZ_RS14060 - 2887711..2888049 (-) 339 WP_067761208.1 tRNA-binding protein -
  ACLKMZ_RS14065 - 2888279..2888614 (-) 336 WP_067761210.1 hypothetical protein -
  ACLKMZ_RS14070 gspG 2888898..2889335 (-) 438 WP_067761211.1 type II secretion system major pseudopilin GspG -
  ACLKMZ_RS14075 gspF 2889362..2890567 (-) 1206 WP_067761214.1 type II secretion system inner membrane protein GspF -
  ACLKMZ_RS14080 priA 2890718..2892940 (+) 2223 WP_180056268.1 primosomal protein N' Machinery gene
  ACLKMZ_RS14085 - 2893018..2894859 (+) 1842 WP_180056267.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  ACLKMZ_RS14090 hslO 2894910..2895785 (+) 876 WP_180056266.1 Hsp33 family molecular chaperone HslO -
  ACLKMZ_RS14095 - 2896032..2896487 (+) 456 WP_180056265.1 DUF2147 domain-containing protein -
  ACLKMZ_RS14100 - 2896772..2897233 (+) 462 WP_180056264.1 DUF2147 domain-containing protein -
  ACLKMZ_RS14105 - 2897421..2897885 (+) 465 WP_180056263.1 DUF2147 domain-containing protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 83976.90 Da        Isoelectric Point: 8.5038

>NTDB_id=1107179 ACLKMZ_RS14080 WP_180056268.1 2890718..2892940(+) (priA) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
MSNSANISQPIYRIRVAVPVYLYDCFDYSLSQEQYQHAQVGARVAVSFGRQNLTGIIVEKIAPDAPLDSSFKLKAITELL
DDQAILDEKVLSLLTWSAQYYQFPVGEVMQSALPTLLRQGKPYNLLARTWNLIDHNAEAKIKRSERQQEAYKILKLHPTG
TGENLLNLSGVETATLKALEKKGICECVLAEQDFSPMPMSMAQMPLTANPDQKKAIDTVLKARKKYQAFLLDGLTGSGKT
EVYLQIMQEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCNIALLHSGLNDSKRMQAWQAAQTGKASIILGTRSAIYTPL
PNLGLIVLDEEHDLSFKQQEGFRYHARDVALFRGHLEQCPVILGSATPSIECYALAKQGKMTILELNQRAGTAVMPKMHI
LDLKVAQKQHGISQLLIGEIRKRLEKKEQVLVFLNRRGYAPVLICESCAWQAKCPHCDANFTIHRTPYQHLHCHHCGTIH
RMPDHCPQCNHQELKSIGMGTAKVEESLNELFSEHDVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRAIERTAQLIVQVTGRAGRGERKGDVFLQTLRPEHPLLNTLVNEDYRKFAQETMKEREMALM
PPFRYAALIRCESKDQQVNTDFLQQHAQQLRQDSDNIIDIWGPIPAPMERKAGRYQAHMVLLSQDRARLHYYLRYWWQNL
LHNKPSNMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=1107179 ACLKMZ_RS14080 WP_180056268.1 2890718..2892940(+) (priA) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
ATGTCAAATTCAGCGAACATTTCTCAGCCTATTTACCGTATCCGTGTTGCTGTTCCGGTTTATCTGTATGACTGTTTTGA
TTACAGCTTAAGTCAAGAGCAATATCAACATGCACAGGTTGGTGCACGTGTCGCTGTGTCATTTGGTCGACAAAATTTGA
CTGGCATTATTGTTGAAAAAATTGCACCCGATGCCCCGCTTGATTCCAGCTTTAAACTCAAAGCCATTACAGAATTACTC
GATGACCAAGCAATATTAGATGAGAAAGTTTTAAGTTTATTGACATGGTCAGCGCAGTATTACCAGTTTCCAGTTGGTGA
GGTGATGCAAAGTGCCTTACCGACGCTGCTGCGCCAAGGCAAACCTTATAACTTATTGGCACGGACATGGAACCTGATTG
ACCATAATGCTGAAGCCAAAATTAAACGTTCAGAGCGTCAGCAAGAAGCGTATAAAATACTAAAATTACATCCCACAGGC
ACAGGTGAAAATCTTTTAAATCTGTCAGGTGTGGAAACAGCAACACTCAAAGCCTTAGAGAAAAAAGGCATCTGCGAATG
TGTATTAGCAGAACAAGACTTTAGCCCGATGCCGATGAGCATGGCGCAAATGCCACTTACGGCAAACCCTGACCAAAAAA
AAGCCATTGATACCGTATTAAAAGCACGTAAAAAATATCAGGCCTTCCTGCTCGATGGCTTAACCGGCAGTGGTAAAACT
GAAGTTTATCTACAGATTATGCAAGAGGTACTAAAACAAGGAAAACAGGTATTGGTTTTAGTTCCTGAGATTGGACTTAC
TCCACAGACGATTAGCCGCTTTCAGTCCCGCTTCCACTGCAATATTGCCTTATTACATTCGGGGCTAAACGATTCAAAAC
GTATGCAAGCATGGCAAGCCGCACAAACGGGTAAAGCCTCTATTATTTTGGGTACACGTTCAGCCATTTATACGCCGCTG
CCAAATCTAGGTTTGATTGTACTCGATGAAGAGCACGACCTTTCCTTTAAACAACAAGAAGGCTTCCGCTACCACGCACG
CGATGTTGCTTTGTTCCGTGGGCATTTAGAGCAATGCCCTGTCATTCTAGGCTCTGCTACACCTAGTATTGAATGCTATG
CCCTTGCCAAACAAGGCAAGATGACAATTTTGGAACTCAATCAACGTGCAGGCACCGCAGTGATGCCCAAAATGCATATA
TTAGATTTAAAAGTTGCGCAAAAACAGCATGGCATTAGCCAACTTTTGATTGGTGAAATTCGTAAACGTCTTGAGAAAAA
AGAGCAAGTATTGGTGTTTTTAAACCGCCGTGGTTATGCACCTGTACTGATTTGTGAAAGTTGTGCATGGCAAGCCAAAT
GCCCACATTGCGATGCCAATTTCACGATTCACCGTACGCCTTATCAACATTTACATTGTCATCACTGCGGCACCATTCAC
CGTATGCCAGATCACTGTCCACAGTGTAATCATCAGGAGCTCAAATCTATTGGGATGGGCACAGCCAAAGTTGAAGAAAG
TTTAAATGAGCTATTTTCTGAACATGACGTCATTCGAGTGGATCGTGACTCGACCAGCCGCGTTGGTAGTTGGCAAAAGA
TTTATGACAAAATTCAAAAAAGTGAACCTGCAATTTTGCTTGGTACGCAAATGCTGGCCAAAGGTCATCATTTCCCTTAC
GTGACGTTGGTAGCAATTTTAGATATAGACTCAGGTCTACTCAGCGTAGACTTTCGTGCCATAGAACGTACTGCTCAACT
GATTGTGCAGGTCACAGGGCGTGCCGGCCGTGGCGAACGTAAAGGCGATGTATTCCTACAAACATTAAGACCCGAGCATC
CCTTACTCAACACACTGGTTAACGAGGATTATCGCAAATTTGCACAGGAAACAATGAAAGAACGGGAAATGGCCTTGATG
CCCCCATTTCGTTATGCCGCCTTGATTCGCTGTGAGTCCAAAGATCAACAAGTGAATACGGATTTTTTACAGCAACATGC
CCAACAGCTACGTCAAGATTCCGACAATATCATCGATATTTGGGGGCCCATTCCTGCACCGATGGAACGCAAAGCTGGAC
GCTATCAAGCACATATGGTGCTTTTGTCGCAAGACCGTGCGCGCCTACATTATTACTTACGCTATTGGTGGCAAAACCTA
TTGCATAACAAGCCATCAAACATGAAGCTCAGTTTAGATATAGACCCACAAGAACTGAGCTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

DEAD/DEAH box helicase (DEAD)

(210-369)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

72.268

98.919

0.715

Multiple sequence alignment