Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ACLKMZ_RS02625 Genome accession   NZ_CP183909
Coordinates   535124..535981 (+) Length   285 a.a.
NCBI ID   WP_411691453.1    Uniprot ID   -
Organism   Acinetobacter gandensis strain M1_NDM_tet(X3)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 530124..540981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKMZ_RS02600 wrbA 531322..531918 (+) 597 WP_411691438.1 NAD(P)H:quinone oxidoreductase -
  ACLKMZ_RS02605 - 531972..532370 (-) 399 WP_411691454.1 hypothetical protein -
  ACLKMZ_RS02610 - 532643..533218 (-) 576 WP_288688143.1 xanthine phosphoribosyltransferase -
  ACLKMZ_RS02615 - 533309..534022 (-) 714 WP_288688145.1 DUF3108 domain-containing protein -
  ACLKMZ_RS02620 - 534181..534864 (-) 684 WP_411691437.1 hypothetical protein -
  ACLKMZ_RS02625 tonB2 535124..535981 (+) 858 WP_411691453.1 energy transducer TonB Machinery gene
  ACLKMZ_RS02630 - 535982..536278 (-) 297 WP_067762871.1 antibiotic biosynthesis monooxygenase family protein -
  ACLKMZ_RS02635 ybeY 536367..536849 (-) 483 WP_180056712.1 rRNA maturation RNase YbeY -
  ACLKMZ_RS02640 - 536868..537950 (-) 1083 WP_067762869.1 PhoH family protein -
  ACLKMZ_RS02645 miaB 537989..539446 (-) 1458 WP_411691436.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32564.06 Da        Isoelectric Point: 6.7510

>NTDB_id=1107162 ACLKMZ_RS02625 WP_411691453.1 535124..535981(+) (tonB2) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
MPLVKEWWKDPVFTTAVLLAALLHLAFLTMQFTMPQEGEYNTKEIAVSLRPATDEVEHADFLAQADQQGSGTFRESHRMS
SDMPAPMIEQKAGEQKNEALEQLQQKKQLSFEEKVLMTTLSWQKQAEENSRKKAVEELNSQFQAKAAMVASIEAQYLQRQ
QNFSRQQKIKTIDGIQAKQDVSAAYMEKFRQKVEFYGNRYYPEAAKQQQLSGEVRLMVILNTNGGIRAIRLIESSGSTLL
DDAAKTSVRKAAPFGQFDAKMKDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=1107162 ACLKMZ_RS02625 WP_411691453.1 535124..535981(+) (tonB2) [Acinetobacter gandensis strain M1_NDM_tet(X3)]
ATGCCGTTGGTCAAAGAGTGGTGGAAAGATCCAGTTTTTACGACTGCGGTTTTACTGGCGGCTTTGTTACATCTGGCATT
TTTGACAATGCAATTTACCATGCCGCAAGAAGGTGAATACAATACCAAAGAAATAGCCGTTTCTTTGCGTCCTGCCACCG
ATGAAGTAGAACATGCTGACTTTTTGGCACAAGCTGATCAACAAGGTTCAGGTACTTTTCGTGAATCACATCGTATGTCG
AGTGATATGCCTGCACCCATGATTGAGCAGAAAGCGGGCGAGCAAAAAAATGAAGCACTTGAGCAATTACAGCAAAAGAA
ACAATTAAGCTTTGAAGAAAAAGTTTTAATGACCACTTTAAGTTGGCAAAAACAAGCCGAAGAAAATAGCCGTAAAAAAG
CCGTTGAAGAACTCAATAGCCAGTTCCAAGCGAAAGCGGCTATGGTGGCAAGTATTGAAGCGCAATATTTACAACGCCAA
CAAAACTTTAGCCGTCAGCAAAAAATTAAAACCATTGATGGAATTCAAGCCAAGCAAGATGTATCGGCTGCCTATATGGA
AAAATTCCGTCAAAAAGTCGAGTTTTATGGCAATCGCTACTATCCTGAAGCTGCTAAACAACAGCAATTATCAGGTGAAG
TACGTCTGATGGTGATATTGAATACCAATGGTGGTATTCGCGCGATTCGTTTAATTGAAAGCTCAGGTTCGACTCTGCTT
GATGACGCAGCGAAAACCTCGGTACGTAAAGCGGCACCATTTGGTCAGTTTGATGCCAAAATGAAAGATATTTCTGAATT
ACGTATTATACGGACGTGGCGTTTTGACCCTGCGGAAGCCGAGTTTGAAGTACGTTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.118

97.895

0.716

Multiple sequence alignment