Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ACLKM0_RS12525 Genome accession   NZ_CP183907
Coordinates   2600170..2600496 (-) Length   108 a.a.
NCBI ID   WP_005181647.1    Uniprot ID   N9MCR8
Organism   Acinetobacter indicus strain M3_NDM     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2595170..2605496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM0_RS12505 - 2595366..2596073 (-) 708 WP_005181667.1 FHA domain-containing protein -
  ACLKM0_RS12510 gspD 2596140..2598389 (-) 2250 WP_163143106.1 type II secretion system secretin GspD -
  ACLKM0_RS12515 - 2598430..2599266 (-) 837 WP_160241692.1 type II secretion system protein N -
  ACLKM0_RS12520 gspN 2599266..2600006 (-) 741 WP_104473370.1 type II secretion system protein N -
  ACLKM0_RS12525 hns 2600170..2600496 (-) 327 WP_005181647.1 H-NS family nucleoid-associated regulatory protein Regulator
  ACLKM0_RS12530 - 2600642..2601070 (-) 429 WP_005181644.1 acyl-CoA thioesterase -
  ACLKM0_RS12535 - 2601081..2602274 (-) 1194 WP_127799618.1 heme biosynthesis protein HemY -
  ACLKM0_RS12540 - 2602277..2603122 (-) 846 WP_168398238.1 hypothetical protein -
  ACLKM0_RS12545 - 2603119..2603898 (-) 780 WP_075167812.1 uroporphyrinogen-III synthase -
  ACLKM0_RS12550 hemC 2603900..2604817 (-) 918 WP_160243710.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12240.97 Da        Isoelectric Point: 8.4694

>NTDB_id=1107139 ACLKM0_RS12525 WP_005181647.1 2600170..2600496(-) (hns) [Acinetobacter indicus strain M3_NDM]
MMPDISNLSVEQLKRLQEEAEALIASKKDQAVEDAYNQILAIAENAGLSIEQILEFGASKRKKNVRKSVEPRYRNKANAN
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1107139 ACLKM0_RS12525 WP_005181647.1 2600170..2600496(-) (hns) [Acinetobacter indicus strain M3_NDM]
ATGATGCCCGATATTAGTAATTTGTCTGTAGAACAATTAAAGCGCTTGCAGGAAGAAGCGGAAGCATTAATTGCATCGAA
AAAGGACCAGGCAGTTGAAGATGCATATAATCAGATTTTGGCAATTGCTGAAAATGCGGGTTTAAGCATTGAACAGATTC
TTGAGTTTGGTGCGTCTAAACGTAAAAAGAATGTACGTAAATCGGTAGAGCCGCGTTATCGTAATAAAGCCAATGCCAAT
GAAACCTGGACAGGTCGTGGTAAGCAACCGCGCTGGTTAGTGGCAGAACTGGAAAAAGGTGCCAAGCTTGAAGACTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9MCR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852

Multiple sequence alignment