Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ACLKM0_RS12055 Genome accession   NZ_CP183907
Coordinates   2493388..2495610 (+) Length   740 a.a.
NCBI ID   WP_005181868.1    Uniprot ID   N9KVY0
Organism   Acinetobacter indicus strain M3_NDM     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2488388..2500610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM0_RS12035 lnt 2489212..2490771 (+) 1560 WP_411687306.1 apolipoprotein N-acyltransferase -
  ACLKM0_RS12040 - 2490927..2491262 (-) 336 WP_016659636.1 hypothetical protein -
  ACLKM0_RS12045 gspG 2491542..2491979 (-) 438 WP_005181871.1 type II secretion system major pseudopilin GspG -
  ACLKM0_RS12050 gspF 2492031..2493236 (-) 1206 WP_005181870.1 type II secretion system inner membrane protein GspF -
  ACLKM0_RS12055 priA 2493388..2495610 (+) 2223 WP_005181868.1 primosomal protein N' Machinery gene
  ACLKM0_RS12060 - 2495661..2497502 (+) 1842 WP_016659637.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  ACLKM0_RS12065 - 2497553..2498428 (+) 876 WP_005181862.1 Hsp33 family molecular chaperone HslO -
  ACLKM0_RS12070 - 2498841..2499302 (+) 462 WP_411688996.1 DUF2147 domain-containing protein -
  ACLKM0_RS12075 - 2499706..2500044 (+) 339 WP_005181858.1 chaperone modulator CbpM -
  ACLKM0_RS12080 - 2500121..2500390 (+) 270 WP_034598128.1 YdcH family protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84221.34 Da        Isoelectric Point: 8.8813

>NTDB_id=1107135 ACLKM0_RS12055 WP_005181868.1 2493388..2495610(+) (priA) [Acinetobacter indicus strain M3_NDM]
MPNSPVHPAPIYRVRVAVPVYLYDGFDYMLSAAEYQQAAVGARVLVSFGRQNLVGIIIEKLPPDHPLDPKIKLKAISELL
DQQPILDQKVLTLLTWSAQYYQFPIGEVMHSALPSLLRQGRPYNLLARMWKLLDDQAEAKLKRSEKQQEAYKVLKLHPSG
TSENILNLAGIETATLKALEKKQICYCDLEQQDFSPVPMTLAQMPLTPNSDQKRAIETVLKAQHRYQAFLLDGLTGSGKT
EVYLQIMQEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAQTGKASIILGTRSAIYTPL
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLEHCPVILGSATPSIDSYALTEQGKMIRLELNQRAGPALMPKIHI
IDLKVAQKQQGLSLLLIQEIKKRLQKKEQVLIFLNRRGYAPVLVCDSCGWQAQCPHCDANFTLHHSPYTHLHCHHCGTIQ
RKPEQCPQCQHNELKTLGMGTAKVEENLQQLFPDYDVVRVDRDSTSRVGSWQKIYDRIQTSQPLILLGTQMLAKGHHFPY
VTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHPLLSTLVEQDYRAFARQTLKERQAALL
PPFRYTALIRCESKSQEQNQQFLQQHAQWLRENSEQLIDIWGPIPAPMERKAGRYQAHLVLLSQDRARLHFYLRAWWQNM
LHHKPSNMKLSLDIDPQEFS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=1107135 ACLKM0_RS12055 WP_005181868.1 2493388..2495610(+) (priA) [Acinetobacter indicus strain M3_NDM]
ATGCCAAATTCGCCCGTTCATCCCGCCCCCATCTACCGTGTTCGTGTAGCTGTTCCGGTCTATCTGTATGACGGGTTTGA
CTATATGCTCAGTGCGGCTGAATATCAGCAGGCTGCCGTTGGCGCGCGGGTGCTGGTGTCCTTTGGCCGGCAGAATCTGG
TGGGCATCATTATTGAAAAACTCCCGCCCGATCATCCGCTTGACCCCAAGATTAAACTGAAAGCCATTAGCGAGCTGCTC
GACCAGCAGCCAATTCTAGATCAGAAAGTTTTAACTTTGTTGACATGGTCGGCGCAGTATTATCAGTTTCCGATTGGCGA
AGTGATGCATAGCGCCCTGCCCAGCCTGTTACGTCAGGGACGCCCGTATAATTTACTGGCACGAATGTGGAAACTACTGG
ATGATCAGGCCGAAGCCAAACTGAAGCGCTCCGAGAAGCAGCAGGAGGCCTATAAAGTCCTGAAGCTGCATCCGAGCGGG
ACTTCAGAAAATATCCTGAATCTGGCCGGTATTGAAACTGCAACCTTAAAAGCGCTGGAAAAAAAGCAGATTTGCTATTG
CGATCTGGAGCAGCAGGATTTTAGCCCGGTGCCAATGACGCTGGCGCAAATGCCGTTAACCCCGAACAGTGACCAGAAAC
GGGCCATTGAAACCGTACTGAAAGCGCAGCATCGTTATCAGGCCTTTTTACTCGATGGTCTGACCGGTAGTGGTAAAACC
GAAGTCTATCTGCAGATCATGCAGGAAGTGCTAAAACAGGGTAAACAGGTATTGGTGCTGGTGCCGGAAATTGGCCTGAC
TCCTCAAACCATTAGCCGCTTCCAGTCACGTTTTCACTGTCATATTGCGCTGCTGCATTCCGGTTTAAATGACAGCAAAC
GTCTGCAGGCCTGGCAGGCCGCCCAGACTGGCAAGGCTTCGATTATTCTTGGTACACGCTCGGCAATTTATACCCCGCTG
CCCAATCTGGGGCTGATTATTCTGGATGAAGAACACGACCTGTCATTTAAACAGCAGGAAGGCTTTCGTTACCATGCCCG
CGATGTGGCCTTATACCGTGCTCATTTAGAACACTGCCCGGTGATTCTCGGTTCGGCCACGCCCAGCATTGACAGCTATG
CCTTAACGGAACAGGGTAAAATGATCCGTCTGGAACTGAACCAGCGTGCCGGCCCGGCACTGATGCCGAAAATTCACATC
ATTGATTTAAAAGTTGCGCAAAAGCAGCAAGGTCTAAGCCTGCTGCTGATTCAGGAAATCAAAAAACGCCTGCAGAAAAA
AGAACAGGTGCTGATTTTCTTAAACCGCCGTGGTTATGCACCGGTGCTGGTCTGTGACAGCTGCGGCTGGCAGGCACAAT
GCCCACACTGTGATGCCAACTTTACCCTGCATCATAGTCCATATACCCATCTGCATTGCCATCATTGTGGCACCATTCAA
CGCAAGCCGGAGCAATGCCCGCAGTGCCAGCATAATGAACTGAAAACCCTGGGCATGGGCACAGCCAAGGTTGAAGAAAA
CCTGCAACAGCTGTTCCCGGATTACGATGTGGTGCGGGTGGACCGCGATTCCACCAGCCGCGTCGGCAGCTGGCAAAAAA
TTTATGACCGCATTCAAACCAGCCAGCCGCTGATTCTGCTCGGCACCCAAATGCTGGCCAAAGGCCACCATTTTCCTTAT
GTCACCTTAGTAGCGATTTTAGATATTGATGCCGGCCTGTTAAGTGTTGATATCCGGGCGCCAGAGCGGACTGCGCAGCT
GATTGTGCAGGTGGCCGGTCGTGCCGGCCGCGGTGAACATAAAGGCGATGTCTATTTACAGACCCTGCGTCCTGATCATC
CGCTGCTGAGCACCCTGGTCGAGCAGGATTATCGTGCCTTTGCCCGGCAAACCTTAAAAGAACGTCAGGCCGCCCTGCTG
CCCCCGTTTCGCTATACCGCCCTGATTCGCTGCGAATCCAAAAGTCAGGAGCAGAACCAGCAGTTTTTACAGCAACATGC
CCAGTGGCTGCGAGAAAATTCTGAACAGTTAATTGATATCTGGGGACCGATTCCGGCGCCAATGGAACGCAAGGCCGGCC
GCTATCAGGCGCATCTGGTGCTGTTGTCGCAAGATCGCGCCCGTTTACATTTTTATCTACGTGCATGGTGGCAAAATATG
TTGCATCACAAGCCATCAAATATGAAACTTAGCTTAGATATAGACCCTCAGGAATTCAGTTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

Type III restriction enzyme, res subunit (ResIII)

(207-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KVY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

73.45

100

0.736

Multiple sequence alignment