Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ACLKM0_RS11470 Genome accession   NZ_CP183907
Coordinates   2376584..2377462 (-) Length   292 a.a.
NCBI ID   WP_005182159.1    Uniprot ID   N9KSY6
Organism   Acinetobacter indicus strain M3_NDM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2371584..2382462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM0_RS11450 miaB 2373135..2374589 (+) 1455 WP_005182171.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ACLKM0_RS11455 - 2374631..2375704 (+) 1074 WP_016659561.1 PhoH family protein -
  ACLKM0_RS11460 ybeY 2375724..2376206 (+) 483 WP_411689252.1 rRNA maturation RNase YbeY -
  ACLKM0_RS11465 - 2376297..2376587 (+) 291 WP_016659563.1 antibiotic biosynthesis monooxygenase family protein -
  ACLKM0_RS11470 tonB2 2376584..2377462 (-) 879 WP_005182159.1 energy transducer TonB Machinery gene
  ACLKM0_RS11475 - 2377702..2378376 (+) 675 WP_411689253.1 hypothetical protein -
  ACLKM0_RS11480 - 2378530..2379243 (+) 714 WP_005182145.1 DUF3108 domain-containing protein -
  ACLKM0_RS11485 - 2379333..2379908 (+) 576 WP_005182137.1 xanthine phosphoribosyltransferase -
  ACLKM0_RS11490 - 2379970..2381121 (-) 1152 WP_005176703.1 IS4-like element ISAbe18 family transposase -
  ACLKM0_RS11495 - 2381405..2381800 (+) 396 WP_016659567.1 hypothetical protein -
  ACLKM0_RS11500 - 2381869..2382060 (-) 192 WP_016659568.1 hypothetical protein -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33024.72 Da        Isoelectric Point: 9.1867

>NTDB_id=1107134 ACLKM0_RS11470 WP_005182159.1 2376584..2377462(-) (tonB2) [Acinetobacter indicus strain M3_NDM]
MLKKFHFAPLTQQWWKDPLFGTVLTLAALSHLAVLTVQFVMPQQSDAAVKEIAVSLRPSATEIKDADFLAQADQQGSGTF
REAHRMSSDMPAPMIEQSAGDQQLESLERLQQQRELSFEEKVLMTTLSWQKQAAENQRKKALEELNSQFQAKAAMVASLE
AQYLQRQQNFSRQQKIKTVDGIQAKQDVAAGYLEKFRQKVEFYGNRYYPEAAKQQQLAGEVRLMVILNANGGIRAIRLIE
SSGHAMLDEAAKASVRKAAPFGAFDAKMKDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 879 bp        

>NTDB_id=1107134 ACLKM0_RS11470 WP_005182159.1 2376584..2377462(-) (tonB2) [Acinetobacter indicus strain M3_NDM]
ATGTTAAAGAAATTTCATTTTGCACCTTTGACGCAGCAGTGGTGGAAAGATCCACTATTTGGCACCGTACTGACGCTGGC
GGCACTTTCGCATCTGGCTGTGTTAACGGTGCAATTTGTCATGCCACAGCAAAGCGATGCCGCGGTCAAGGAAATTGCGG
TCAGCTTAAGGCCAAGTGCCACCGAAATTAAGGACGCCGACTTTTTAGCACAGGCCGATCAGCAAGGTTCTGGCACTTTC
CGGGAAGCGCACCGCATGTCCAGCGATATGCCCGCACCAATGATTGAACAGAGTGCCGGTGATCAGCAGCTGGAAAGTCT
GGAGCGTTTGCAGCAGCAGCGTGAACTGAGCTTTGAAGAAAAAGTGCTAATGACTACCTTAAGCTGGCAAAAGCAGGCGG
CGGAAAACCAGCGTAAAAAAGCGCTAGAAGAATTGAACAGCCAGTTTCAGGCCAAAGCGGCGATGGTGGCCAGTCTAGAA
GCGCAGTATTTACAGCGTCAGCAAAATTTTAGCCGTCAGCAGAAAATTAAAACCGTAGATGGAATTCAGGCCAAGCAGGA
TGTCGCGGCCGGTTATCTGGAAAAATTCCGTCAGAAAGTCGAATTTTATGGTAATCGTTATTATCCGGAAGCGGCCAAGC
AGCAACAGCTGGCCGGTGAAGTACGTTTAATGGTGATTTTAAATGCCAACGGCGGGATTCGCGCGATTCGTTTAATTGAA
AGCTCGGGACATGCCATGCTGGATGAAGCTGCCAAGGCTTCTGTGCGTAAAGCTGCTCCTTTTGGTGCCTTTGATGCCAA
GATGAAAGATATTTCCGAGCTACGCATTATCCGGACCTGGCGTTTTGACCCGGCTGAGGCGGAGTTTGAGGTGCGCTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(205-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KSY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

76.344

95.548

0.729

Multiple sequence alignment