Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   ACLKM0_RS07510 Genome accession   NZ_CP183907
Coordinates   1574025..1574369 (-) Length   114 a.a.
NCBI ID   WP_242898261.1    Uniprot ID   -
Organism   Acinetobacter indicus strain M3_NDM     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1569025..1579369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM0_RS07480 tadA 1569254..1569775 (-) 522 WP_411688676.1 tRNA adenosine(34) deaminase TadA -
  ACLKM0_RS07485 - 1569779..1570903 (-) 1125 WP_005177517.1 enoyl-CoA hydratase/isomerase family protein -
  ACLKM0_RS07490 ung 1570900..1571613 (-) 714 WP_005177514.1 uracil-DNA glycosylase -
  ACLKM0_RS07495 - 1571655..1572251 (-) 597 WP_005177512.1 6-pyruvoyl trahydropterin synthase family protein -
  ACLKM0_RS07500 gspK 1572400..1573347 (-) 948 WP_411688675.1 type II secretion system minor pseudopilin GspK -
  ACLKM0_RS07505 xcpW 1573393..1574028 (-) 636 WP_411688674.1 type II secretion system protein GspJ Machinery gene
  ACLKM0_RS07510 xcpV 1574025..1574369 (-) 345 WP_242898261.1 type II secretion system protein Machinery gene
  ACLKM0_RS07515 - 1574512..1575084 (-) 573 WP_075166785.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACLKM0_RS07520 - 1575090..1575704 (-) 615 WP_075166784.1 TetR/AcrR family transcriptional regulator -
  ACLKM0_RS07525 - 1575765..1576538 (-) 774 WP_411688673.1 TatD family hydrolase -
  ACLKM0_RS07530 - 1576568..1576909 (-) 342 WP_005177501.1 PilZ domain-containing protein -
  ACLKM0_RS07535 - 1576921..1577904 (-) 984 WP_075166783.1 DNA polymerase III subunit delta' -
  ACLKM0_RS07540 kdsB 1577913..1578677 (-) 765 WP_104488987.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12600.34 Da        Isoelectric Point: 6.2041

>NTDB_id=1107127 ACLKM0_RS07510 WP_242898261.1 1574025..1574369(-) (xcpV) [Acinetobacter indicus strain M3_NDM]
MVALAIFATAAMALTQVAMQYTQSTSHAILRTKAQFVALNEQALMEIQQDWLTGTQSKQVTLQGESWQIDKSAQPTISPN
VQRVEVQVSLFNPDTGQVEAGITHLVFFNHRVAQ

Nucleotide


Download         Length: 345 bp        

>NTDB_id=1107127 ACLKM0_RS07510 WP_242898261.1 1574025..1574369(-) (xcpV) [Acinetobacter indicus strain M3_NDM]
ATGGTGGCACTGGCGATTTTTGCTACAGCTGCTATGGCGCTGACTCAAGTGGCCATGCAATATACCCAGTCGACCTCTCA
TGCCATTTTAAGAACCAAAGCGCAGTTTGTGGCCTTAAACGAACAGGCTCTAATGGAAATCCAGCAGGACTGGCTGACGG
GTACGCAATCAAAACAGGTCACCCTGCAAGGTGAAAGCTGGCAAATTGATAAAAGCGCACAGCCGACCATTAGCCCGAAT
GTGCAGCGGGTAGAAGTGCAGGTCAGCTTATTTAACCCCGATACCGGTCAGGTTGAAGCCGGCATCACCCATTTGGTGTT
TTTTAATCATCGGGTGGCGCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(31-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

76.786

98.246

0.754

Multiple sequence alignment