Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ACLKM1_RS11080 Genome accession   NZ_CP183903
Coordinates   2328133..2328990 (-) Length   285 a.a.
NCBI ID   WP_005094077.1    Uniprot ID   N9MCW5
Organism   Acinetobacter pseudolwoffii strain M5_NDM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2323133..2333990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM1_RS11065 miaB 2324877..2326334 (+) 1458 WP_411689704.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ACLKM1_RS11070 - 2326373..2327449 (+) 1077 WP_005094064.1 PhoH family protein -
  ACLKM1_RS11075 ybeY 2327472..2327954 (+) 483 WP_005094076.1 rRNA maturation RNase YbeY -
  ACLKM1_RS11080 tonB2 2328133..2328990 (-) 858 WP_005094077.1 energy transducer TonB Machinery gene
  ACLKM1_RS11085 - 2329253..2329939 (+) 687 WP_005094079.1 hypothetical protein -
  ACLKM1_RS11090 - 2330130..2330813 (+) 684 WP_370982144.1 DUF3108 domain-containing protein -
  ACLKM1_RS11095 - 2330902..2331477 (+) 576 WP_005094083.1 xanthine phosphoribosyltransferase -
  ACLKM1_RS11100 - 2331788..2332450 (-) 663 WP_411689706.1 hypothetical protein -
  ACLKM1_RS11105 - 2332534..2333739 (-) 1206 WP_005168679.1 CsgG/HfaB family protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32644.04 Da        Isoelectric Point: 6.5169

>NTDB_id=1107091 ACLKM1_RS11080 WP_005094077.1 2328133..2328990(-) (tonB2) [Acinetobacter pseudolwoffii strain M5_NDM]
MPLVRTWWKDPVFSSAVLTAGILHLIVLTLEFGMPQDRETSTKEIAVSLRQTDEKIEHADFLAQTDQQGSGKFREAHRMS
SDMPSPLLEQKAGEEQQESPDLLQQKQELSFEEKVLMTTLSWQKQAEENQRKKMQEQLQSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQSKQDVSAAYLEKFRQKVEFYGNQYYPEAAKQQNLAGEVRLMVILNQNGGIRAIRLIDSSGHAML
DEAAKSSVRKAAPFGAFDAKMKEISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=1107091 ACLKM1_RS11080 WP_005094077.1 2328133..2328990(-) (tonB2) [Acinetobacter pseudolwoffii strain M5_NDM]
ATGCCTCTGGTCAGAACCTGGTGGAAAGATCCAGTGTTTAGCAGTGCCGTGCTCACCGCAGGCATTCTGCATTTGATCGT
ATTGACACTGGAATTTGGTATGCCGCAAGATCGGGAGACCAGCACCAAAGAAATTGCAGTCAGCTTGCGACAAACAGATG
AAAAAATTGAACACGCTGATTTTCTGGCCCAGACAGACCAGCAAGGGTCTGGCAAGTTTCGAGAAGCGCATCGGATGTCG
AGTGATATGCCATCTCCTTTGTTAGAGCAGAAGGCAGGGGAAGAACAACAAGAAAGTCCGGATCTGCTGCAACAGAAACA
GGAACTCAGTTTTGAAGAAAAAGTGCTGATGACCACCTTGAGCTGGCAAAAACAGGCAGAAGAAAATCAGCGTAAAAAAA
TGCAGGAGCAGTTACAAAGCCAGTTTCAGGCCAAAGCAGCCATGGTGGCCAGTCTGGAAGCGCAATATTTACAGCGTCAG
CAAAATTTTAGTCGTCAGCAAAAAATTAAAACTGTGGATGGTATTCAATCCAAGCAGGATGTCTCCGCAGCCTATCTGGA
AAAGTTCCGTCAGAAAGTAGAGTTTTATGGCAATCAGTATTATCCGGAAGCTGCCAAGCAGCAGAATCTGGCAGGTGAAG
TTCGTCTGATGGTGATCCTGAATCAGAATGGAGGGATTCGTGCCATCCGATTAATTGACAGTTCAGGACATGCCATGCTG
GATGAGGCTGCGAAATCTTCTGTACGTAAAGCGGCGCCATTTGGTGCGTTTGATGCCAAAATGAAGGAAATTTCTGAATT
GCGGATTATCCGAACCTGGCGTTTTGATCCGGCTGAAGCAGAGTTTGAAGTACGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9MCW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.118

97.895

0.716

Multiple sequence alignment