Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ACLKM1_RS01050 Genome accession   NZ_CP183903
Coordinates   223624..223950 (+) Length   108 a.a.
NCBI ID   WP_167381258.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain M5_NDM     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 218624..228950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM1_RS01025 hemC 219309..220232 (+) 924 WP_005095241.1 hydroxymethylbilane synthase -
  ACLKM1_RS01030 - 220232..221011 (+) 780 WP_180050161.1 uroporphyrinogen-III synthase -
  ACLKM1_RS01035 - 221008..221844 (+) 837 WP_100329461.1 hypothetical protein -
  ACLKM1_RS01040 - 221851..223044 (+) 1194 WP_411689515.1 heme biosynthesis protein HemY -
  ACLKM1_RS01045 - 223053..223481 (+) 429 WP_005173055.1 acyl-CoA thioesterase -
  ACLKM1_RS01050 hns 223624..223950 (+) 327 WP_167381258.1 H-NS family nucleoid-associated regulatory protein Regulator
  ACLKM1_RS01055 gspN 224132..224875 (+) 744 WP_411689514.1 type II secretion system protein N -
  ACLKM1_RS01060 - 224875..225738 (+) 864 WP_411689513.1 type II secretion system protein N -
  ACLKM1_RS01065 gspD 225777..228029 (+) 2253 WP_411689512.1 type II secretion system secretin GspD -
  ACLKM1_RS01070 - 228092..228751 (+) 660 WP_411689510.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12304.04 Da        Isoelectric Point: 7.0191

>NTDB_id=1107072 ACLKM1_RS01050 WP_167381258.1 223624..223950(+) (hns) [Acinetobacter pseudolwoffii strain M5_NDM]
MMPDITHLSVEELKRLQAEAESLIASKKDQEIEDAYQQILAVADKVGMTVEQLLEFGASKRKKSSRKSVEPRYRSKSNPD
DTWTGRGKQPRWLVAELDKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1107072 ACLKM1_RS01050 WP_167381258.1 223624..223950(+) (hns) [Acinetobacter pseudolwoffii strain M5_NDM]
ATTATGCCAGATATTACTCATTTATCAGTAGAAGAGTTAAAGCGTTTACAAGCCGAAGCAGAATCACTGATTGCTTCAAA
AAAAGACCAAGAGATCGAAGATGCTTATCAGCAAATCTTGGCCGTTGCTGACAAAGTAGGTATGACGGTTGAACAGTTAC
TTGAATTTGGCGCGTCTAAACGCAAGAAATCATCACGTAAATCAGTGGAGCCACGTTATCGTAGCAAAAGCAACCCAGAT
GATACCTGGACGGGTCGTGGCAAGCAGCCGCGCTGGTTGGTGGCAGAGCTGGACAAAGGTGCCAAGCTTGAAGATTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

77.778

100

0.778

Multiple sequence alignment