Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ACLKM2_RS07945 Genome accession   NZ_CP183899
Coordinates   1720298..1720933 (-) Length   211 a.a.
NCBI ID   WP_411686511.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1715298..1725933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM2_RS07915 - 1715679..1716110 (-) 432 WP_005097315.1 SRPBCC family protein -
  ACLKM2_RS07920 tadA 1716166..1716681 (-) 516 WP_180040959.1 tRNA adenosine(34) deaminase TadA -
  ACLKM2_RS07925 - 1716689..1717810 (-) 1122 WP_005097318.1 enoyl-CoA hydratase/isomerase family protein -
  ACLKM2_RS07930 ung 1717807..1718520 (-) 714 WP_074383250.1 uracil-DNA glycosylase -
  ACLKM2_RS07935 - 1718567..1719163 (-) 597 WP_005097321.1 6-pyruvoyl trahydropterin synthase family protein -
  ACLKM2_RS07940 gspK 1719317..1720285 (-) 969 WP_411686510.1 type II secretion system minor pseudopilin GspK -
  ACLKM2_RS07945 xcpW 1720298..1720933 (-) 636 WP_411686511.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ACLKM2_RS07950 xcpV 1720930..1721376 (-) 447 WP_005170409.1 type II secretion system minor pseudopilin GspI Machinery gene
  ACLKM2_RS07955 - 1721438..1721989 (-) 552 WP_411686512.1 type II secretion system protein -
  ACLKM2_RS07960 - 1722004..1722618 (-) 615 WP_100355372.1 TetR/AcrR family transcriptional regulator -
  ACLKM2_RS07965 - 1722659..1723432 (-) 774 WP_100535277.1 TatD family hydrolase -
  ACLKM2_RS07970 - 1723460..1723801 (-) 342 WP_005170399.1 PilZ domain-containing protein -
  ACLKM2_RS07975 - 1723817..1724797 (-) 981 WP_179999363.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  ACLKM2_RS07980 kdsB 1724812..1725573 (-) 762 WP_180076189.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24083.26 Da        Isoelectric Point: 4.6378

>NTDB_id=1107048 ACLKM2_RS07945 WP_411686511.1 1720298..1720933(-) (xcpW) [Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)]
MKPKGFTLVELLVAIAIFAVLSALGWKVFDYIVKTKDQNAVHEQRLGQLQETYQQILRDTVQAVPLTANINSDIQPALVL
QNGRFNFSKTGVTDPLEEGVSPDERIEYQYRADEQKLYRLKYRNLNQTGRDQPESSILLSDVEQFQVVVLNPNELTQWPD
SSMDLNQLEQKQRLPKGIKINLTVNGVSYEWLFSLLNTDFLLDNQNTGQPG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1107048 ACLKM2_RS07945 WP_411686511.1 1720298..1720933(-) (xcpW) [Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)]
ATGAAGCCTAAAGGATTTACCCTGGTCGAATTATTGGTTGCCATTGCAATCTTTGCGGTACTGTCTGCTTTGGGCTGGAA
AGTTTTTGATTATATTGTCAAAACCAAAGATCAAAATGCAGTACATGAACAGCGTCTAGGTCAGCTACAGGAAACCTATC
AGCAAATTTTACGGGATACGGTACAGGCAGTCCCTTTAACGGCCAATATCAATAGTGATATTCAACCGGCTCTGGTTTTG
CAAAATGGCCGTTTTAATTTTAGTAAAACTGGCGTGACTGATCCTCTGGAGGAGGGTGTTTCGCCAGATGAACGCATTGA
ATATCAGTATCGGGCCGATGAACAAAAACTGTATCGACTGAAATATCGCAACCTGAATCAGACCGGTCGTGATCAACCTG
AATCCAGTATTTTATTATCGGACGTTGAGCAATTTCAGGTTGTGGTGCTGAATCCAAATGAACTCACACAGTGGCCTGAT
TCTTCTATGGATTTAAATCAGCTAGAGCAGAAACAGCGCTTGCCCAAAGGCATTAAAATCAATTTAACCGTGAATGGCGT
CAGCTATGAGTGGCTGTTTAGTTTATTAAATACGGACTTTTTGCTTGATAATCAGAATACAGGTCAACCCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(58-188)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

58.333

96.682

0.564

Multiple sequence alignment