Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ACLKM2_RS01045 Genome accession   NZ_CP183899
Coordinates   223873..224199 (+) Length   108 a.a.
NCBI ID   WP_167381258.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 218873..229199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM2_RS01020 hemC 219557..220480 (+) 924 WP_005095241.1 hydroxymethylbilane synthase -
  ACLKM2_RS01025 - 220480..221259 (+) 780 WP_100356940.1 uroporphyrinogen-III synthase -
  ACLKM2_RS01030 - 221256..222092 (+) 837 WP_411686596.1 hypothetical protein -
  ACLKM2_RS01035 - 222099..223292 (+) 1194 WP_411686597.1 heme biosynthesis protein HemY -
  ACLKM2_RS01040 - 223301..223729 (+) 429 WP_411686598.1 acyl-CoA thioesterase -
  ACLKM2_RS01045 hns 223873..224199 (+) 327 WP_167381258.1 H-NS family nucleoid-associated regulatory protein Regulator
  ACLKM2_RS01050 gspN 224381..225124 (+) 744 WP_180001408.1 type II secretion system protein N -
  ACLKM2_RS01055 - 225124..225987 (+) 864 WP_411686599.1 type II secretion system protein N -
  ACLKM2_RS01060 gspD 226026..228278 (+) 2253 WP_180071880.1 type II secretion system secretin GspD -
  ACLKM2_RS01065 - 228341..229000 (+) 660 WP_005095259.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12304.04 Da        Isoelectric Point: 7.0191

>NTDB_id=1107034 ACLKM2_RS01045 WP_167381258.1 223873..224199(+) (hns) [Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)]
MMPDITHLSVEELKRLQAEAESLIASKKDQEIEDAYQQILAVADKVGMTVEQLLEFGASKRKKSSRKSVEPRYRSKSNPD
DTWTGRGKQPRWLVAELDKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1107034 ACLKM2_RS01045 WP_167381258.1 223873..224199(+) (hns) [Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)]
ATTATGCCAGATATTACTCATTTATCAGTAGAAGAGTTAAAGCGTTTACAAGCCGAAGCAGAATCACTGATTGCTTCAAA
AAAAGACCAAGAGATCGAAGATGCTTATCAGCAAATCTTGGCCGTTGCTGACAAAGTAGGTATGACGGTTGAACAGTTAC
TTGAATTTGGCGCGTCTAAACGCAAGAAATCATCACGTAAATCAGTGGAGCCACGTTATCGTAGCAAAAGCAACCCAGAT
GATACCTGGACGGGTCGTGGCAAGCAGCCGCGCTGGTTGGTGGCAGAGCTGGACAAAGGTGCCAAGCTTGAAGATTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

77.778

100

0.778

Multiple sequence alignment