Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ACLKM3_RS12870 Genome accession   NZ_CP183897
Coordinates   2650124..2650450 (-) Length   108 a.a.
NCBI ID   WP_019838112.1    Uniprot ID   A0AAV4YZI1
Organism   Acinetobacter towneri strain M10_NDM     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2645124..2655450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM3_RS12850 - 2645344..2645994 (-) 651 WP_019838108.1 FHA domain-containing protein -
  ACLKM3_RS12855 gspD 2646064..2648322 (-) 2259 WP_019838109.1 type II secretion system secretin GspD -
  ACLKM3_RS12860 - 2648382..2649221 (-) 840 WP_019838110.1 type II secretion system protein N -
  ACLKM3_RS12865 gspN 2649221..2649961 (-) 741 WP_019838111.1 type II secretion system protein N -
  ACLKM3_RS12870 hns 2650124..2650450 (-) 327 WP_019838112.1 H-NS family nucleoid-associated regulatory protein Regulator
  ACLKM3_RS12875 - 2650611..2651027 (-) 417 WP_019838113.1 acyl-CoA thioesterase -
  ACLKM3_RS12880 - 2651037..2652230 (-) 1194 WP_019838114.1 hypothetical protein -
  ACLKM3_RS12885 - 2652231..2653067 (-) 837 WP_411690773.1 hypothetical protein -
  ACLKM3_RS12890 - 2653064..2653843 (-) 780 WP_019838116.1 uroporphyrinogen-III synthase -
  ACLKM3_RS12895 hemC 2653865..2654785 (-) 921 WP_019838117.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12159.98 Da        Isoelectric Point: 8.4825

>NTDB_id=1107024 ACLKM3_RS12870 WP_019838112.1 2650124..2650450(-) (hns) [Acinetobacter towneri strain M10_NDM]
MMPDISNLSVEQLKHLQAEAEALIATKKDQAIEDAYDQILAIADNLGLSIEQILEVGESKRKKSPRKTVAPRYRSKTNPT
DTWTGRGKKPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1107024 ACLKM3_RS12870 WP_019838112.1 2650124..2650450(-) (hns) [Acinetobacter towneri strain M10_NDM]
ATGATGCCTGATATTAGCAATTTGTCTGTAGAACAGTTAAAGCATTTACAAGCGGAAGCGGAAGCATTAATTGCAACAAA
AAAAGATCAAGCGATTGAAGATGCCTATGATCAAATTTTAGCGATTGCAGACAATTTGGGTTTAAGCATTGAGCAGATTT
TGGAAGTTGGCGAAAGCAAGCGTAAGAAAAGCCCACGTAAAACTGTAGCGCCACGTTATCGTAGCAAAACCAATCCTACA
GATACTTGGACGGGTCGTGGAAAAAAACCACGCTGGTTAGTCGCTGAAATAGAAAAAGGCGCAAAACTTGAAGATTTTCT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

75

100

0.75

Multiple sequence alignment