Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ACLKM3_RS11525 Genome accession   NZ_CP183897
Coordinates   2374461..2375318 (-) Length   285 a.a.
NCBI ID   WP_201764364.1    Uniprot ID   -
Organism   Acinetobacter towneri strain M10_NDM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2369461..2380318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM3_RS11510 miaB 2371078..2372532 (+) 1455 WP_004976194.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ACLKM3_RS11515 - 2372572..2373645 (+) 1074 WP_004976193.1 PhoH family protein -
  ACLKM3_RS11520 ybeY 2373690..2374172 (+) 483 WP_019836928.1 rRNA maturation RNase YbeY -
  ACLKM3_RS11525 tonB2 2374461..2375318 (-) 858 WP_201764364.1 energy transducer TonB Machinery gene
  ACLKM3_RS11530 - 2375593..2376267 (+) 675 WP_026438082.1 hypothetical protein -
  ACLKM3_RS11535 - 2376413..2377126 (+) 714 WP_411690640.1 DUF3108 domain-containing protein -
  ACLKM3_RS11540 - 2377255..2377830 (+) 576 WP_019836924.1 xanthine phosphoribosyltransferase -
  ACLKM3_RS11545 - 2378093..2378491 (+) 399 WP_104853039.1 hypothetical protein -
  ACLKM3_RS11550 - 2378558..2378749 (-) 192 WP_019836921.1 hypothetical protein -
  ACLKM3_RS11555 wrbA 2379037..2379633 (-) 597 WP_019836920.1 NAD(P)H:quinone oxidoreductase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32119.43 Da        Isoelectric Point: 6.7488

>NTDB_id=1107019 ACLKM3_RS11525 WP_201764364.1 2374461..2375318(-) (tonB2) [Acinetobacter towneri strain M10_NDM]
MPSAQNWWKDPIFAAALLVAAVLHALILAVQFAAPQQSDAAVKEIAVSVRMSDAKVEDADFLAQADQQGSGTFREQHRIS
SDMPAPMTEQSAGEQELESLERMQQQRELNFEEKVLMTTLSWQKQAAENQRKKAMQELNSQFQAKAAMVASIEAQYLQRQ
QNFSRQQKIKTIDGIQAKQDNTAGYMEKFRQKVEFYGNRYYPEQAKAQNLAGEVRLMVVLNSNGGIRAIRLIESSGHAML
DEAAKASVRKAAPFGAFDAKMKDISELRIVRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=1107019 ACLKM3_RS11525 WP_201764364.1 2374461..2375318(-) (tonB2) [Acinetobacter towneri strain M10_NDM]
ATGCCTTCTGCGCAAAATTGGTGGAAAGATCCTATTTTTGCTGCAGCGTTGCTGGTGGCTGCTGTACTGCACGCATTAAT
TTTGGCAGTGCAGTTTGCTGCACCACAACAAAGCGATGCTGCGGTCAAGGAAATTGCGGTATCGGTACGCATGAGCGATG
CAAAAGTTGAAGATGCAGATTTCTTAGCTCAAGCCGACCAGCAAGGTTCAGGTACATTCCGTGAACAACATCGCATCTCG
AGTGACATGCCTGCGCCCATGACCGAACAAAGTGCAGGGGAGCAGGAATTAGAAAGTTTAGAGCGTATGCAGCAACAGCG
TGAATTAAACTTTGAAGAAAAAGTGTTGATGACCACGCTCAGTTGGCAGAAACAGGCGGCAGAAAATCAGCGCAAAAAAG
CCATGCAGGAGTTGAATAGTCAATTTCAAGCTAAGGCGGCCATGGTTGCCAGTATTGAAGCGCAATATTTACAACGCCAA
CAAAACTTTAGCCGTCAGCAAAAAATTAAAACCATTGATGGAATTCAGGCCAAGCAAGATAACACAGCGGGCTATATGGA
AAAATTCCGTCAAAAAGTCGAGTTTTATGGCAACCGCTATTACCCCGAACAGGCCAAAGCACAAAATTTAGCGGGTGAAG
TGCGTTTAATGGTAGTTTTAAACAGCAATGGTGGGATTCGTGCCATTCGTTTAATTGAAAGTTCAGGTCATGCTATGTTG
GATGAAGCAGCCAAAGCTTCGGTACGCAAAGCTGCACCTTTTGGTGCATTTGATGCGAAAATGAAAGATATTTCGGAATT
GCGGATTGTGCGAACGTGGCGTTTTGACCCTGCCGAAGCTGAATTTGAAGTGCGCTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

70.968

97.895

0.695

Multiple sequence alignment