Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   ACLKM3_RS07545 Genome accession   NZ_CP183897
Coordinates   1591337..1591717 (-) Length   126 a.a.
NCBI ID   WP_019836528.1    Uniprot ID   -
Organism   Acinetobacter towneri strain M10_NDM     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1586337..1596717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM3_RS07515 tadA 1586551..1587042 (-) 492 WP_019836522.1 tRNA adenosine(34) deaminase TadA -
  ACLKM3_RS07520 - 1587071..1588192 (-) 1122 WP_019836523.1 enoyl-CoA hydratase/isomerase family protein -
  ACLKM3_RS07525 ung 1588189..1588902 (-) 714 WP_411690862.1 uracil-DNA glycosylase -
  ACLKM3_RS07530 - 1588940..1589536 (-) 597 WP_019836525.1 6-pyruvoyl trahydropterin synthase family protein -
  ACLKM3_RS07535 gspK 1589720..1590703 (-) 984 WP_019836526.1 type II secretion system minor pseudopilin GspK -
  ACLKM3_RS07540 xcpW 1590726..1591340 (-) 615 WP_019836527.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ACLKM3_RS07545 xcpV 1591337..1591717 (-) 381 WP_019836528.1 type II secretion system minor pseudopilin GspI Machinery gene
  ACLKM3_RS07550 - 1591707..1592258 (-) 552 WP_019836529.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACLKM3_RS07555 - 1592265..1592879 (-) 615 WP_019836530.1 TetR/AcrR family transcriptional regulator -
  ACLKM3_RS07560 - 1592975..1593748 (-) 774 WP_019836531.1 TatD family hydrolase -
  ACLKM3_RS07565 - 1593772..1594113 (-) 342 WP_019836532.1 PilZ domain-containing protein -
  ACLKM3_RS07570 - 1594124..1595113 (-) 990 WP_019836533.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  ACLKM3_RS07575 kdsB 1595128..1595889 (-) 762 WP_019836534.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13980.99 Da        Isoelectric Point: 6.2920

>NTDB_id=1107016 ACLKM3_RS07545 WP_019836528.1 1591337..1591717(-) (xcpV) [Acinetobacter towneri strain M10_NDM]
MKAKGFTLLEVMVALAIFATAAMAMTKVAMQYTQSTANAILRTKAQFVALNEVALMEMNRQWLSGTESKQVTQQGETWQI
DKSTQPTISPNVQRVDLQISLYNQDSGQVEAGVTSLVFFNTREQQS

Nucleotide


Download         Length: 381 bp        

>NTDB_id=1107016 ACLKM3_RS07545 WP_019836528.1 1591337..1591717(-) (xcpV) [Acinetobacter towneri strain M10_NDM]
ATGAAAGCTAAAGGATTTACACTACTTGAAGTTATGGTGGCTTTGGCAATTTTCGCAACAGCAGCCATGGCAATGACCAA
AGTGGCGATGCAATATACTCAATCCACCGCCAATGCCATTTTAAGAACCAAAGCACAATTTGTGGCTTTGAATGAAGTGG
CATTGATGGAAATGAATCGGCAATGGTTAAGTGGAACAGAGTCCAAGCAAGTGACACAACAGGGCGAAACATGGCAAATT
GACAAGTCCACACAGCCAACCATTAGCCCGAATGTGCAACGTGTTGATCTCCAAATCAGTTTATATAATCAAGACTCGGG
ACAAGTTGAAGCAGGCGTGACTTCTTTGGTGTTTTTTAATACCCGTGAGCAGCAGTCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

77.5

95.238

0.738

Multiple sequence alignment