Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACLKM3_RS01360 Genome accession   NZ_CP183897
Coordinates   301075..301497 (+) Length   140 a.a.
NCBI ID   WP_019836175.1    Uniprot ID   -
Organism   Acinetobacter towneri strain M10_NDM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 296075..306497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM3_RS01345 - 296177..296863 (+) 687 WP_019836173.1 pilus assembly PilX family protein -
  ACLKM3_RS01350 - 296882..300487 (+) 3606 WP_411690785.1 pilus assembly protein PilC -
  ACLKM3_RS01355 - 300497..301075 (+) 579 WP_019836174.1 type IV pilin protein -
  ACLKM3_RS01360 comF 301075..301497 (+) 423 WP_019836175.1 type IV pilin protein Machinery gene
  ACLKM3_RS01365 rpsP 301701..301958 (+) 258 WP_004974526.1 30S ribosomal protein S16 -
  ACLKM3_RS01370 rimM 301987..302535 (+) 549 WP_019836176.1 ribosome maturation factor RimM -
  ACLKM3_RS01375 trmD 302578..303327 (+) 750 WP_019836177.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACLKM3_RS01380 rplS 303500..303871 (+) 372 WP_004974529.1 50S ribosomal protein L19 -
  ACLKM3_RS01385 - 303940..304911 (-) 972 WP_019836178.1 esterase/lipase family protein -
  ACLKM3_RS01390 - 305084..306037 (-) 954 WP_227499373.1 esterase/lipase family protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15387.52 Da        Isoelectric Point: 9.2935

>NTDB_id=1107000 ACLKM3_RS01360 WP_019836175.1 301075..301497(+) (comF) [Acinetobacter towneri strain M10_NDM]
MWLQKGFNLIELMIVVAIIGILAAIAYPSYTQYKIRTNRADVQGEMMQIAQRLQSYYVMNHNYTNAKLDNNGLSKDYPAS
GSVYTITLVPAAQTWTLTAAPKSGTVQNGNGAVVLNSQGQKCWEKGTTCSVSASSNWESR

Nucleotide


Download         Length: 423 bp        

>NTDB_id=1107000 ACLKM3_RS01360 WP_019836175.1 301075..301497(+) (comF) [Acinetobacter towneri strain M10_NDM]
ATGTGGTTACAAAAAGGATTTAATCTAATTGAATTAATGATTGTTGTCGCAATTATTGGCATCTTGGCAGCAATTGCTTA
TCCATCTTACACACAGTACAAAATCCGTACCAATCGGGCAGATGTACAAGGTGAAATGATGCAAATTGCACAACGTTTGC
AAAGCTATTATGTAATGAACCATAATTATACAAACGCAAAGTTGGATAATAATGGTTTAAGTAAAGATTATCCTGCTTCA
GGAAGCGTATATACCATCACACTTGTACCCGCGGCGCAAACGTGGACACTTACGGCTGCACCTAAATCGGGAACAGTTCA
AAATGGTAATGGAGCAGTGGTGCTAAATAGCCAAGGACAAAAATGTTGGGAGAAAGGAACGACATGCAGTGTTTCTGCTT
CTTCAAATTGGGAAAGTCGTTAA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

54.167

100

0.557
  pilE Acinetobacter baumannii D1279779

49.64

99.286

0.493
  comE Acinetobacter baylyi ADP1

33.333

100

0.386

Multiple sequence alignment