Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ACLKM5_RS02295 Genome accession   NZ_CP183893
Coordinates   488809..489687 (+) Length   292 a.a.
NCBI ID   WP_005182159.1    Uniprot ID   N9KSY6
Organism   Acinetobacter indicus strain D10_NDM_tet(X3)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 483809..494687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM5_RS02265 wrbA 484597..485193 (+) 597 WP_016659569.1 NAD(P)H:quinone oxidoreductase -
  ACLKM5_RS02270 - 485481..485672 (+) 192 WP_016659568.1 hypothetical protein -
  ACLKM5_RS02275 - 485741..486136 (-) 396 WP_016659567.1 hypothetical protein -
  ACLKM5_RS02280 - 486354..486929 (-) 576 WP_005182137.1 xanthine phosphoribosyltransferase -
  ACLKM5_RS02285 - 487019..487732 (-) 714 WP_005182145.1 DUF3108 domain-containing protein -
  ACLKM5_RS02290 - 487886..488569 (-) 684 WP_016659565.1 hypothetical protein -
  ACLKM5_RS02295 tonB2 488809..489687 (+) 879 WP_005182159.1 energy transducer TonB Machinery gene
  ACLKM5_RS02300 - 489684..489974 (-) 291 WP_163169943.1 antibiotic biosynthesis monooxygenase family protein -
  ACLKM5_RS02305 ybeY 490063..490545 (-) 483 WP_005182166.1 rRNA maturation RNase YbeY -
  ACLKM5_RS02310 - 490565..491638 (-) 1074 WP_016659561.1 PhoH family protein -
  ACLKM5_RS02315 miaB 491680..493134 (-) 1455 WP_005182171.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33024.72 Da        Isoelectric Point: 9.1867

>NTDB_id=1106923 ACLKM5_RS02295 WP_005182159.1 488809..489687(+) (tonB2) [Acinetobacter indicus strain D10_NDM_tet(X3)]
MLKKFHFAPLTQQWWKDPLFGTVLTLAALSHLAVLTVQFVMPQQSDAAVKEIAVSLRPSATEIKDADFLAQADQQGSGTF
REAHRMSSDMPAPMIEQSAGDQQLESLERLQQQRELSFEEKVLMTTLSWQKQAAENQRKKALEELNSQFQAKAAMVASLE
AQYLQRQQNFSRQQKIKTVDGIQAKQDVAAGYLEKFRQKVEFYGNRYYPEAAKQQQLAGEVRLMVILNANGGIRAIRLIE
SSGHAMLDEAAKASVRKAAPFGAFDAKMKDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 879 bp        

>NTDB_id=1106923 ACLKM5_RS02295 WP_005182159.1 488809..489687(+) (tonB2) [Acinetobacter indicus strain D10_NDM_tet(X3)]
ATGTTAAAGAAATTTCATTTTGCACCTTTGACGCAGCAGTGGTGGAAAGATCCACTATTTGGCACCGTACTGACGCTGGC
GGCACTTTCGCATCTGGCTGTGTTAACGGTGCAATTTGTCATGCCACAGCAAAGCGATGCCGCGGTCAAGGAAATTGCGG
TCAGCTTAAGGCCAAGTGCCACCGAAATTAAGGACGCCGACTTTTTAGCACAGGCCGATCAGCAAGGTTCTGGCACCTTC
CGGGAAGCGCACCGCATGTCCAGCGATATGCCCGCACCAATGATTGAACAGAGTGCCGGTGATCAGCAGCTGGAAAGTCT
GGAGCGTTTGCAGCAGCAGCGTGAACTGAGCTTTGAAGAAAAAGTGCTAATGACTACCTTAAGCTGGCAAAAGCAGGCGG
CGGAAAACCAGCGTAAAAAAGCGCTAGAAGAATTGAACAGCCAGTTTCAGGCCAAAGCGGCGATGGTGGCCAGTCTAGAA
GCGCAGTATTTACAGCGTCAGCAAAATTTTAGCCGTCAGCAGAAAATTAAAACCGTAGATGGAATTCAGGCCAAGCAGGA
TGTCGCGGCCGGTTATCTGGAAAAATTCCGTCAGAAAGTCGAATTTTATGGTAATCGTTATTATCCGGAAGCGGCCAAGC
AGCAACAGCTGGCCGGTGAAGTACGTTTAATGGTGATTTTAAATGCCAACGGCGGGATTCGCGCGATTCGTTTAATTGAA
AGCTCGGGACATGCCATGCTGGATGAAGCTGCTAAAGCCTCAGTACGAAAAGCTGCTCCTTTTGGTGCCTTTGATGCCAA
GATGAAAGATATTTCCGAGCTACGCATTATCCGGACCTGGCGTTTTGACCCGGCTGAGGCGGAGTTTGAGGTGCGCTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(205-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KSY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

76.344

95.548

0.729

Multiple sequence alignment