Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ACLKM5_RS01225 Genome accession   NZ_CP183893
Coordinates   262614..262940 (+) Length   108 a.a.
NCBI ID   WP_104473371.1    Uniprot ID   -
Organism   Acinetobacter indicus strain D10_NDM_tet(X3)     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 257614..267940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM5_RS01200 hemC 258293..259210 (+) 918 WP_411687593.1 hydroxymethylbilane synthase -
  ACLKM5_RS01205 - 259212..259991 (+) 780 WP_168407769.1 uroporphyrinogen-III synthase -
  ACLKM5_RS01210 - 259988..260833 (+) 846 WP_168398238.1 hypothetical protein -
  ACLKM5_RS01215 - 260836..262029 (+) 1194 WP_180036844.1 heme biosynthesis protein HemY -
  ACLKM5_RS01220 - 262040..262468 (+) 429 WP_180036843.1 acyl-CoA thioesterase -
  ACLKM5_RS01225 hns 262614..262940 (+) 327 WP_104473371.1 H-NS family nucleoid-associated regulatory protein Regulator
  ACLKM5_RS01230 gspN 263104..263844 (+) 741 WP_104473370.1 type II secretion system protein N -
  ACLKM5_RS01235 - 263844..264680 (+) 837 WP_180036842.1 type II secretion system protein N -
  ACLKM5_RS01240 gspD 264721..266970 (+) 2250 WP_016659681.1 type II secretion system secretin GspD -
  ACLKM5_RS01245 - 267037..267744 (+) 708 WP_168370320.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12299.01 Da        Isoelectric Point: 6.4273

>NTDB_id=1106918 ACLKM5_RS01225 WP_104473371.1 262614..262940(+) (hns) [Acinetobacter indicus strain D10_NDM_tet(X3)]
MMPDISNLSVEQLKRLQEEAEALIASKKDQAVEDAYNQILAIAENAGLSIEQILEFGESKRKKNVRKSVEPRYRNKANAN
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1106918 ACLKM5_RS01225 WP_104473371.1 262614..262940(+) (hns) [Acinetobacter indicus strain D10_NDM_tet(X3)]
ATGATGCCCGATATTAGTAATTTGTCTGTAGAACAATTAAAGCGCTTGCAGGAAGAAGCGGAAGCATTAATTGCATCGAA
AAAGGACCAGGCAGTTGAAGATGCATATAATCAGATTTTGGCAATTGCTGAAAATGCGGGTTTAAGCATTGAACAGATTC
TTGAGTTTGGTGAGTCTAAACGTAAAAAGAATGTACGTAAATCGGTAGAGCCGCGTTATCGTAATAAAGCCAATGCCAAT
GAAACCTGGACAGGTCGTGGTAAGCAACCGCGCTGGTTAGTGGCAGAACTGGAAAAAGGTGCCAAGCTTGAAGACTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

84.259

100

0.843

Multiple sequence alignment