Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ACLKM6_RS06395 | Genome accession | NZ_CP183890 |
| Coordinates | 1311692..1312036 (+) | Length | 114 a.a. |
| NCBI ID | WP_252725315.1 | Uniprot ID | - |
| Organism | Acinetobacter indicus strain D11_NDM_tet(X5) | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1306692..1317036
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLKM6_RS06365 | kdsB | 1307384..1308148 (+) | 765 | WP_104472237.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| ACLKM6_RS06370 | - | 1308157..1309140 (+) | 984 | WP_005177500.1 | DNA polymerase III, delta' subunit | - |
| ACLKM6_RS06375 | - | 1309152..1309493 (+) | 342 | WP_160243274.1 | PilZ domain-containing protein | - |
| ACLKM6_RS06380 | - | 1309523..1310296 (+) | 774 | WP_005177502.1 | TatD family hydrolase | - |
| ACLKM6_RS06385 | - | 1310357..1310971 (+) | 615 | WP_075166784.1 | TetR/AcrR family transcriptional regulator | - |
| ACLKM6_RS06390 | - | 1310977..1311549 (+) | 573 | WP_168395281.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| ACLKM6_RS06395 | xcpV | 1311692..1312036 (+) | 345 | WP_252725315.1 | type II secretion system protein | Machinery gene |
| ACLKM6_RS06400 | xcpW | 1312033..1312668 (+) | 636 | WP_104472233.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ACLKM6_RS06405 | gspK | 1312701..1313648 (+) | 948 | WP_411686886.1 | type II secretion system minor pseudopilin GspK | - |
| ACLKM6_RS06410 | - | 1313796..1314392 (+) | 597 | WP_005177512.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| ACLKM6_RS06415 | ung | 1314434..1315147 (+) | 714 | WP_005177514.1 | uracil-DNA glycosylase | - |
| ACLKM6_RS06420 | - | 1315144..1316268 (+) | 1125 | WP_168389797.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ACLKM6_RS06425 | tadA | 1316272..1316793 (+) | 522 | WP_168389798.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 114 a.a. Molecular weight: 12632.40 Da Isoelectric Point: 6.2041
>NTDB_id=1106889 ACLKM6_RS06395 WP_252725315.1 1311692..1312036(+) (xcpV) [Acinetobacter indicus strain D11_NDM_tet(X5)]
MVALAIFATAAMALTQVAMQYTQSTSHAILRTKAQFMALNEQALMEIQQDWLTGTQSKQVTLQGESWQIDKSAQPTISPN
VQRVEVQVSLFNPDTGQVEAGITHLVFFNHRVAQ
MVALAIFATAAMALTQVAMQYTQSTSHAILRTKAQFMALNEQALMEIQQDWLTGTQSKQVTLQGESWQIDKSAQPTISPN
VQRVEVQVSLFNPDTGQVEAGITHLVFFNHRVAQ
Nucleotide
Download Length: 345 bp
>NTDB_id=1106889 ACLKM6_RS06395 WP_252725315.1 1311692..1312036(+) (xcpV) [Acinetobacter indicus strain D11_NDM_tet(X5)]
ATGGTGGCACTGGCGATTTTTGCTACAGCTGCTATGGCGCTGACTCAAGTGGCCATGCAATATACCCAGTCGACCTCTCA
TGCCATTTTAAGAACCAAAGCGCAGTTTATGGCCTTAAATGAACAGGCTCTAATGGAAATCCAGCAGGACTGGCTCACGG
GTACGCAATCAAAACAGGTCACCCTGCAAGGTGAAAGCTGGCAAATTGATAAAAGCGCACAGCCGACCATTAGCCCGAAT
GTGCAGCGGGTAGAAGTGCAGGTCAGCTTATTTAACCCCGATACCGGTCAGGTTGAAGCCGGCATCACCCATTTGGTGTT
TTTTAATCATCGGGTGGCGCAATGA
ATGGTGGCACTGGCGATTTTTGCTACAGCTGCTATGGCGCTGACTCAAGTGGCCATGCAATATACCCAGTCGACCTCTCA
TGCCATTTTAAGAACCAAAGCGCAGTTTATGGCCTTAAATGAACAGGCTCTAATGGAAATCCAGCAGGACTGGCTCACGG
GTACGCAATCAAAACAGGTCACCCTGCAAGGTGAAAGCTGGCAAATTGATAAAAGCGCACAGCCGACCATTAGCCCGAAT
GTGCAGCGGGTAGAAGTGCAGGTCAGCTTATTTAACCCCGATACCGGTCAGGTTGAAGCCGGCATCACCCATTTGGTGTT
TTTTAATCATCGGGTGGCGCAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
75.893 |
98.246 |
0.746 |