Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ACLKM6_RS02120 Genome accession   NZ_CP183890
Coordinates   451594..452472 (+) Length   292 a.a.
NCBI ID   WP_168384797.1    Uniprot ID   -
Organism   Acinetobacter indicus strain D11_NDM_tet(X5)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446594..457472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM6_RS02090 wrbA 447383..447979 (+) 597 WP_016659569.1 NAD(P)H:quinone oxidoreductase -
  ACLKM6_RS02095 - 448267..448458 (+) 192 WP_016659568.1 hypothetical protein -
  ACLKM6_RS02100 - 448527..448922 (-) 396 WP_016659567.1 hypothetical protein -
  ACLKM6_RS02105 - 449140..449715 (-) 576 WP_005182137.1 xanthine phosphoribosyltransferase -
  ACLKM6_RS02110 - 449805..450518 (-) 714 WP_045796415.1 DUF3108 domain-containing protein -
  ACLKM6_RS02115 - 450671..451354 (-) 684 WP_016659565.1 hypothetical protein -
  ACLKM6_RS02120 tonB2 451594..452472 (+) 879 WP_168384797.1 energy transducer TonB Machinery gene
  ACLKM6_RS02125 - 452469..452759 (-) 291 WP_163169943.1 antibiotic biosynthesis monooxygenase family protein -
  ACLKM6_RS02130 ybeY 452847..453329 (-) 483 WP_005182166.1 rRNA maturation RNase YbeY -
  ACLKM6_RS02135 - 453349..454422 (-) 1074 WP_016659561.1 PhoH family protein -
  ACLKM6_RS02140 miaB 454464..455918 (-) 1455 WP_005182171.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33054.74 Da        Isoelectric Point: 9.1867

>NTDB_id=1106882 ACLKM6_RS02120 WP_168384797.1 451594..452472(+) (tonB2) [Acinetobacter indicus strain D11_NDM_tet(X5)]
MLKKFHFAPLTQQWWKDPLFGTVLTLAALSHLAVLTVQFVMPQQSDAAVKEIAVSLRPSATEIKDADFLAQADQQGSGTF
REAHRMSSDMPAPMIEQSAGDQQLESLERLQQQRELSFEEKVLMTTLSWQKQAAENQRKKALEELNSQFQAKAAMVASLE
AQYLQRQQNFSRQQKIKTVDGIQAKQDVAAGYLEKFRQKVEFYGNRYYPEAAKQQQLAGEVRLMVILNANGGIRAIRLIE
SSGHTMLDEAAKASVRKAAPFGAFDAKMKDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 879 bp        

>NTDB_id=1106882 ACLKM6_RS02120 WP_168384797.1 451594..452472(+) (tonB2) [Acinetobacter indicus strain D11_NDM_tet(X5)]
ATGTTAAAGAAATTTCATTTTGCACCTTTGACGCAGCAGTGGTGGAAAGATCCACTATTTGGCACCGTACTGACGCTGGC
GGCACTTTCGCATCTGGCTGTGTTAACGGTGCAATTTGTCATGCCACAGCAAAGCGATGCCGCGGTCAAGGAAATTGCAG
TCAGCTTAAGACCAAGTGCCACCGAAATTAAGGATGCCGACTTTTTAGCACAGGCCGACCAGCAGGGTTCTGGCACCTTC
CGGGAAGCGCACCGCATGTCCAGCGATATGCCCGCACCAATGATTGAACAGAGTGCCGGTGATCAGCAGCTGGAAAGTCT
TGAGCGTTTGCAGCAGCAGCGTGAACTGAGCTTTGAAGAAAAAGTGCTAATGACCACCTTAAGCTGGCAAAAGCAGGCGG
CGGAAAACCAGCGTAAAAAAGCGCTGGAAGAATTAAACAGCCAGTTTCAGGCCAAAGCGGCGATGGTGGCCAGTCTGGAA
GCGCAGTATTTACAGCGTCAGCAAAATTTCAGCCGTCAGCAGAAAATTAAAACCGTAGATGGAATTCAGGCCAAGCAGGA
TGTCGCAGCCGGTTATCTGGAAAAATTCCGTCAGAAAGTCGAATTTTATGGTAACCGTTATTATCCGGAAGCGGCCAAGC
AGCAACAGTTGGCCGGTGAGGTGCGTTTAATGGTGATTTTAAATGCCAACGGTGGGATTCGTGCGATTCGTTTAATTGAA
AGCTCGGGGCATACCATGCTGGATGAAGCTGCCAAGGCTTCTGTGCGTAAAGCTGCTCCTTTTGGTGCCTTTGATGCCAA
GATGAAAGATATTTCCGAGCTACGCATTATCCGGACCTGGCGTTTTGACCCGGCTGAGGCGGAGTTTGAGGTGCGCTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(205-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

76.344

95.548

0.729

Multiple sequence alignment