Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ACLKM6_RS00995 Genome accession   NZ_CP183890
Coordinates   215623..215949 (+) Length   108 a.a.
NCBI ID   WP_005181647.1    Uniprot ID   N9MCR8
Organism   Acinetobacter indicus strain D11_NDM_tet(X5)     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 210623..220949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM6_RS00970 hemC 211302..212219 (+) 918 WP_160243710.1 hydroxymethylbilane synthase -
  ACLKM6_RS00975 - 212221..213000 (+) 780 WP_075167812.1 uroporphyrinogen-III synthase -
  ACLKM6_RS00980 - 212997..213842 (+) 846 WP_005181639.1 hypothetical protein -
  ACLKM6_RS00985 - 213845..215038 (+) 1194 WP_411687079.1 heme biosynthesis protein HemY -
  ACLKM6_RS00990 - 215049..215477 (+) 429 WP_005181644.1 acyl-CoA thioesterase -
  ACLKM6_RS00995 hns 215623..215949 (+) 327 WP_005181647.1 H-NS family nucleoid-associated regulatory protein Regulator
  ACLKM6_RS01000 gspN 216113..216853 (+) 741 WP_104473370.1 type II secretion system protein N -
  ACLKM6_RS01005 - 216853..217689 (+) 837 WP_127799620.1 type II secretion system protein N -
  ACLKM6_RS01010 gspD 217730..219979 (+) 2250 WP_411687080.1 type II secretion system secretin GspD -
  ACLKM6_RS01015 - 220046..220753 (+) 708 WP_104472166.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12240.97 Da        Isoelectric Point: 8.4694

>NTDB_id=1106877 ACLKM6_RS00995 WP_005181647.1 215623..215949(+) (hns) [Acinetobacter indicus strain D11_NDM_tet(X5)]
MMPDISNLSVEQLKRLQEEAEALIASKKDQAVEDAYNQILAIAENAGLSIEQILEFGASKRKKNVRKSVEPRYRNKANAN
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1106877 ACLKM6_RS00995 WP_005181647.1 215623..215949(+) (hns) [Acinetobacter indicus strain D11_NDM_tet(X5)]
ATGATGCCCGATATTAGTAATTTGTCTGTAGAACAATTAAAGCGCTTGCAGGAAGAAGCGGAAGCATTAATTGCATCGAA
AAAGGACCAGGCAGTTGAAGATGCATATAATCAGATTTTGGCAATTGCTGAAAATGCGGGTTTAAGCATTGAACAGATTC
TTGAGTTTGGTGCGTCTAAACGTAAAAAGAATGTACGTAAATCGGTAGAGCCGCGTTATCGTAATAAAGCCAATGCCAAT
GAAACCTGGACAGGTCGTGGTAAGCAACCGCGCTGGTTAGTGGCAGAACTGGAAAAAGGTGCCAAGCTTGAAGACTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9MCR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852

Multiple sequence alignment