Detailed information NTG0110681

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ACGHCW_RS15000
• Genome accession: NZ_AP031614
• Coordinates: 3243858..3244865 (+)
• Length: 335 a.a.
• NCBI ID: WP_005450580.1
• Uniprot ID: K5TI37
• Organism: Vibrio harveyi strain TUMSAT-2019
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3238858..3249865

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACGHCW_RS14975 (VHTUMSATKI_28580)	rplD	3238900..3239502 (-)	603	WP_005435074.1	50S ribosomal protein L4	-
ACGHCW_RS14980 (VHTUMSATKI_28590)	rplC	3239520..3240149 (-)	630	WP_005435072.1	50S ribosomal protein L3	-
ACGHCW_RS14985 (VHTUMSATKI_28600)	rpsJ	3240164..3240475 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
ACGHCW_RS14990 (VHTUMSATKI_28610)	rpmE	3240932..3241153 (-)	222	WP_005450576.1	50S ribosomal protein L31	-
ACGHCW_RS14995 (VHTUMSATKI_28620)	priA	3241450..3243651 (+)	2202	WP_017190030.1	primosomal protein N'	-
ACGHCW_RS15000 (VHTUMSATKI_28630)	cytR	3243858..3244865 (+)	1008	WP_005450580.1	DNA-binding transcriptional regulator CytR	Regulator
ACGHCW_RS15005 (VHTUMSATKI_28640)	-	3245031..3245576 (+)	546	WP_005450581.1	SPOR domain-containing protein	-
ACGHCW_RS15010 (VHTUMSATKI_28650)	hslV	3245897..3246448 (+)	552	WP_009698878.1	ATP-dependent protease subunit HslV	-
ACGHCW_RS15015 (VHTUMSATKI_28660)	hslU	3246478..3247809 (+)	1332	WP_009698879.1	HslU--HslV peptidase ATPase subunit	-
ACGHCW_RS15020 (VHTUMSATKI_28680)	-	3248118..3249035 (+)	918	WP_005450584.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ACGHCW_RS15025 (VHTUMSATKI_28690)	rraA	3249111..3249638 (+)	528	WP_390502043.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36918.48 Da
• Isoelectric Point: 5.9796

>NTDB_id=110681 ACGHCW_RS15000 WP_005450580.1 3243858..3244865(+) (cytR) [Vibrio harveyi strain TUMSAT-2019]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKEEQYSIVADFSFEGGVQAVRKLLELPEPPTA
LFCHCDTMAIGAIQEAKRLGLRIPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPPLR

Nucleotide

• Length: 1008 bp

>NTDB_id=110681 ACGHCW_RS15000 WP_005450580.1 3243858..3244865(+) (cytR) [Vibrio harveyi strain TUMSAT-2019]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGGGTATCTACTGCTACGGTATCGCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCATCAACAAGAAAGAGAGTGGAAGATGCCGTACTTGAAGCTGGTTATTCACCAAATTCATTAGCTCGTAATT
TACGTAGAAATGAATCAAAGACCATTGTCACTATCGTACCGGACATATGCGATCCGTATTTCTCTGAAATCATTCGCGGT
ATCGAAGATGCAGCAATGGAACACGGTTACCTAGTTCTTCTCGGCGATAGCGGTCAGCAGAAAAAGCGCGAAAGCTCATT
CGTAAACTTAGTATTCACCAAGCAAGCTGATGGCATGTTACTACTGGGCACCGACTTACCATTCGATGTCAGCAAGCCAG
AGCAGAAAAACCTACCACCAATGGTCATGGCGTGCGAATTCGCTCCTGAGCTGGAACTACCAACGGTGCATATCGATAAC
TTGACCTCTGCATTTGAAGCCGTGAACTACCTGACGCAACTTGGTCACAAGCGTATTGCTCAGATCTCCGGTCCAGATAC
TGCGGTGCTGTGCCAGTTCCGCCAACAAGGTTACCAACAAGCACTTCGCCGTGCTGGTATTAGTAAAGAAGAGCAATACA
GCATTGTGGCTGACTTCTCTTTCGAAGGTGGCGTTCAAGCCGTACGCAAACTTCTCGAATTGCCTGAACCACCAACCGCT
CTATTCTGTCACTGCGACACCATGGCGATTGGTGCTATCCAAGAAGCGAAACGTCTTGGTCTGCGTATTCCGCAGGATTT
ATCGGTTGTCGGCTTTGATGATATTCAATTCGCGCAATACTGCGATCCACCGTTAACCACCATCTCTCAACCACGCTATG
AGATTGGTCGCCAAGCAATGTTAATGATGCTAGAGCTACTGAAAGGTCACGATGTGCACTCAGGCTCTCGCTTACTTGAA
ACTAAATTAGTTGTGCGTGGTAGTGCAGCGCCACCACCTTTGCGCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: K5TI37

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	96.386	99.104	0.955
cytR	Vibrio cholerae C6706	90.663	99.104	0.899