Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACN6MT_RS24260 Genome accession   NZ_CP183883
Coordinates   4945918..4947750 (-) Length   610 a.a.
NCBI ID   WP_419888425.1    Uniprot ID   -
Organism   Neobacillus niacini strain BE6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4940918..4952750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MT_RS24245 (ACN6MT_24245) - 4942044..4942964 (+) 921 WP_419888422.1 hypothetical protein -
  ACN6MT_RS24250 (ACN6MT_24250) - 4942970..4943704 (+) 735 WP_419888423.1 SH3 domain-containing protein -
  ACN6MT_RS24255 (ACN6MT_24255) fbp 4943758..4945689 (-) 1932 WP_419888424.1 fructose-1,6-bisphosphatase -
  ACN6MT_RS24260 (ACN6MT_24260) rcrQ 4945918..4947750 (-) 1833 WP_419888425.1 ABC transporter ATP-binding protein Regulator
  ACN6MT_RS24265 (ACN6MT_24265) rcrP 4947743..4949506 (-) 1764 WP_419888426.1 ABC transporter ATP-binding protein Regulator
  ACN6MT_RS24270 (ACN6MT_24270) - 4949599..4950024 (-) 426 WP_063255343.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACN6MT_RS24275 (ACN6MT_24275) - 4950164..4950694 (-) 531 WP_419888427.1 helix-turn-helix domain-containing protein -
  ACN6MT_RS24280 (ACN6MT_24280) - 4950844..4952145 (-) 1302 WP_419888428.1 TRAP transporter large permease -
  ACN6MT_RS24285 (ACN6MT_24285) - 4952168..4952647 (-) 480 WP_419888429.1 TRAP transporter small permease -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 67633.23 Da        Isoelectric Point: 6.3817

>NTDB_id=1106720 ACN6MT_RS24260 WP_419888425.1 4945918..4947750(-) (rcrQ) [Neobacillus niacini strain BE6]
MAENRQEQNRTTPSGPPHGGGPRGPVAKPKDFKKTFRQLISYCKVFLPLIIIALLLAMAGAIFNIIGPEFLNQITDLITE
GMMTSIDLDAVVNVAAILAFLYGLGALFNYIQGYIMATVTQRVSKNLRTDISTKINRLPLKYFDKTSTGDVLSRITNDVD
MIGQTMNQSLGALVSAVTMFFGSLIMMFYTNWIMAISAILSTFIGFALMTFIISKSQKYFAQQQKELGKLNGHIEEIYSG
HHVVKVYNGEKNAKETFHEINTRLYDSAWKSQFMSGLMMPLMMFVGNFGYVVVSIVGAVLAVNDVISFGVIVAFMIYIRL
FTQPLTQIAQAATNLQSTAAASERVFEFLAEEELADESKKHERLETANGDVEFKNVRFGYSEDKMVIKDFSAVAKAGQKV
AIVGPTGAGKTTLVNLLMRFYEVNGGEILIDGVPANKLTRANIHDLFSMVLQDTWLFEGTIRENIVYSRNGVSDDEIEEA
CKAVGLHHFIKTLPKGYDTILDDKANLSAGQKQLITIARAMIEHKPLLILDEATSSVDTRTEVLIQQAMDKLTVGKTSFV
IAHRLSTIKNADLILVMKDGDIIESGNHEELLQKNGFYAELYNSQFENAS

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=1106720 ACN6MT_RS24260 WP_419888425.1 4945918..4947750(-) (rcrQ) [Neobacillus niacini strain BE6]
TTGGCTGAAAATCGACAGGAACAGAATAGAACGACACCATCAGGCCCGCCGCATGGAGGCGGTCCCCGTGGTCCAGTTGC
AAAACCTAAGGATTTTAAGAAAACATTTAGGCAGCTGATATCGTATTGCAAAGTATTTTTGCCACTAATTATCATTGCCT
TGTTACTGGCAATGGCAGGGGCCATTTTCAACATCATTGGACCAGAGTTCCTGAATCAGATTACCGATTTGATTACGGAA
GGAATGATGACCAGCATCGATCTTGACGCAGTGGTTAATGTCGCAGCCATTCTTGCTTTTCTATATGGCTTAGGTGCTTT
GTTTAATTACATTCAAGGTTATATTATGGCCACCGTTACACAGCGGGTGTCCAAGAATCTACGGACTGATATCTCAACTA
AAATCAATCGTTTGCCGTTAAAATACTTTGACAAGACCAGTACAGGAGATGTGTTAAGTCGGATAACAAACGATGTTGAT
ATGATTGGCCAGACGATGAATCAAAGTTTAGGTGCACTAGTTTCGGCAGTGACCATGTTCTTCGGCTCGCTGATCATGAT
GTTCTATACAAACTGGATTATGGCAATTTCAGCCATATTATCAACTTTTATAGGCTTTGCATTAATGACTTTCATCATCT
CAAAGTCGCAAAAGTACTTTGCTCAGCAGCAAAAAGAGCTAGGTAAATTAAACGGTCATATTGAGGAAATCTATTCTGGC
CACCATGTTGTGAAGGTTTATAATGGAGAGAAAAATGCGAAGGAAACCTTCCATGAAATCAACACTAGACTTTACGATAG
TGCCTGGAAATCTCAATTTATGTCAGGGCTGATGATGCCGTTAATGATGTTTGTTGGGAATTTTGGTTACGTGGTTGTAA
GTATCGTCGGTGCCGTTCTTGCCGTGAATGATGTCATTTCATTTGGTGTTATTGTAGCCTTTATGATTTATATCCGACTG
TTTACGCAGCCTCTTACACAGATTGCTCAGGCCGCTACCAACCTGCAGTCGACAGCAGCAGCGAGTGAACGTGTCTTTGA
ATTCCTTGCTGAAGAAGAACTTGCAGATGAAAGTAAAAAACATGAAAGACTTGAAACCGCCAATGGAGATGTGGAGTTTA
AAAATGTTCGCTTCGGCTATAGTGAGGACAAAATGGTGATTAAAGACTTCTCTGCTGTAGCAAAGGCAGGTCAAAAAGTG
GCGATTGTCGGTCCTACCGGTGCCGGTAAAACAACTTTGGTAAACCTGCTAATGCGATTCTATGAAGTAAATGGCGGGGA
GATTTTGATTGACGGAGTACCAGCCAATAAGCTCACGAGGGCAAACATTCATGACCTATTTAGTATGGTTCTTCAGGACA
CATGGTTGTTTGAAGGCACCATTCGTGAGAATATTGTTTATTCCAGGAATGGAGTTTCGGATGATGAAATAGAGGAGGCA
TGTAAAGCAGTGGGTCTTCACCACTTCATTAAAACACTGCCAAAAGGCTATGATACGATACTCGATGATAAAGCAAATCT
GTCCGCTGGCCAAAAACAGCTGATTACCATTGCTAGGGCAATGATTGAGCATAAACCATTGCTTATTTTAGACGAGGCAA
CTAGTTCAGTTGATACCCGTACGGAAGTATTGATTCAGCAAGCTATGGATAAGCTGACAGTCGGCAAAACTTCATTTGTA
ATTGCGCATAGACTTTCAACTATAAAGAATGCAGACTTGATCCTAGTTATGAAGGACGGAGACATAATAGAAAGTGGAAA
TCACGAAGAATTATTACAGAAGAATGGTTTCTATGCTGAGCTTTATAATAGTCAGTTTGAAAATGCTTCATAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(50-325)

ABC transporter (ABC_tran)

(388-535)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.84

94.098

0.544

Multiple sequence alignment