Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACN6MT_RS13385 Genome accession   NZ_CP183883
Coordinates   2756986..2758686 (+) Length   566 a.a.
NCBI ID   WP_419956185.1    Uniprot ID   -
Organism   Neobacillus niacini strain BE6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2751986..2763686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MT_RS13360 (ACN6MT_13360) xseB 2752397..2752594 (+) 198 WP_235847039.1 exodeoxyribonuclease VII small subunit -
  ACN6MT_RS13365 (ACN6MT_13365) - 2752598..2753491 (+) 894 WP_419956183.1 polyprenyl synthetase family protein -
  ACN6MT_RS13370 (ACN6MT_13370) dxs 2753639..2755531 (+) 1893 WP_419956436.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ACN6MT_RS13375 (ACN6MT_13375) - 2755535..2756374 (+) 840 WP_419956184.1 TlyA family RNA methyltransferase -
  ACN6MT_RS13380 (ACN6MT_13380) ahrC 2756521..2756970 (+) 450 WP_283861436.1 transcriptional regulator AhrC/ArgR -
  ACN6MT_RS13385 (ACN6MT_13385) recN 2756986..2758686 (+) 1701 WP_419956185.1 DNA repair protein RecN Machinery gene
  ACN6MT_RS13390 (ACN6MT_13390) spoIVB 2758793..2760082 (+) 1290 WP_419956186.1 SpoIVB peptidase -
  ACN6MT_RS13395 (ACN6MT_13395) spo0A 2760365..2761156 (+) 792 WP_419956187.1 sporulation transcription factor Spo0A -
  ACN6MT_RS13400 (ACN6MT_13400) - 2761222..2761359 (-) 138 WP_419956188.1 YycC family protein -
  ACN6MT_RS13405 (ACN6MT_13405) - 2761401..2762129 (+) 729 WP_419956189.1 glycerophosphodiester phosphodiesterase -
  ACN6MT_RS13410 (ACN6MT_13410) - 2762140..2762382 (-) 243 WP_034673137.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 64282.15 Da        Isoelectric Point: 5.1062

>NTDB_id=1106715 ACN6MT_RS13385 WP_419956185.1 2756986..2758686(+) (recN) [Neobacillus niacini strain BE6]
MLSELSIKNFAIIEALSISFDKGLTVLTGETGAGKSIIIDAIHLLVGGRGSAEFVRHGEEKAEIEGLFQIDEHHPCHSKA
FEFGIEIEEGMVVLRRDISRSGKSVCRINGKLVTISTLREVGSTLVDIHSQHEHQDLMDESRHLLLLDQYGYDEISQSQA
EYQEVFHRYEQTSQKLKSLSENEQKTAHRLDLIQFQFDEIQNAKLKLKEDEELFEEKRKLANFERVFEAVQSSYNALTGE
QKGLDWISMVMGQLEDAAALDSAYKEIYESVMNSFYQLEDASRMLRNELDGLEYDPQRLNEIEERLNEINQLKRKYGKTI
EEILEYAAKIEEEIETLQNKETHIGQLEKQLTSIKKDLILEAKQLTELRKRWADKLTTLIHNELKELYMAKTVFEIRFES
ILPHFSKNGVDHVEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQSIAEKIYN
VAVDSQVLCISHLPQVAAMADTHLFISKVTEGGRTKTSVNPLSIEEKIKEIGRMISGAEITDLTKKHAEELLFLASENKK
IVKLPN

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=1106715 ACN6MT_RS13385 WP_419956185.1 2756986..2758686(+) (recN) [Neobacillus niacini strain BE6]
TTGTTATCAGAATTATCGATAAAGAACTTTGCAATAATAGAGGCCCTTTCCATTTCGTTTGATAAAGGGCTGACCGTTTT
AACAGGAGAAACAGGTGCAGGGAAATCCATTATTATAGATGCCATTCACCTGCTTGTAGGTGGCAGAGGATCCGCTGAGT
TTGTCAGACATGGAGAAGAAAAAGCTGAAATTGAAGGTCTTTTCCAAATCGATGAGCACCATCCTTGCCACTCAAAGGCT
TTTGAGTTTGGGATCGAAATTGAAGAAGGAATGGTTGTTTTACGAAGAGATATCTCTCGTTCGGGCAAAAGTGTGTGTAG
AATTAACGGGAAACTAGTGACCATATCGACCCTTCGTGAAGTGGGATCAACCCTAGTGGATATACATAGCCAGCACGAAC
ACCAAGATTTAATGGACGAGAGCAGACATTTACTCTTACTCGACCAATATGGATATGATGAAATATCTCAGTCACAGGCA
GAATACCAGGAAGTGTTTCACCGCTATGAACAAACGTCCCAAAAGCTTAAATCGCTGAGTGAAAATGAGCAAAAAACCGC
ACATCGCCTCGATCTCATTCAATTTCAGTTTGATGAAATTCAAAATGCTAAATTAAAGTTGAAAGAAGACGAAGAACTTT
TTGAAGAGAAAAGAAAACTTGCGAATTTTGAGCGTGTATTCGAGGCTGTTCAATCCAGTTATAATGCCTTAACTGGAGAA
CAAAAGGGACTTGATTGGATTAGTATGGTAATGGGTCAGCTAGAAGACGCTGCAGCACTGGATTCAGCATATAAAGAAAT
ATATGAATCCGTTATGAACAGCTTTTATCAATTGGAAGATGCCTCACGTATGTTGAGGAATGAACTAGACGGATTAGAAT
ATGACCCACAGCGTTTAAATGAGATTGAAGAGCGATTAAATGAAATTAATCAGTTGAAGCGTAAGTACGGAAAAACGATT
GAAGAAATCTTAGAATATGCCGCTAAAATAGAAGAAGAAATTGAAACATTGCAAAACAAGGAAACACATATCGGTCAATT
AGAAAAGCAGTTAACGTCCATTAAAAAAGATTTAATCCTTGAGGCTAAACAGTTAACCGAGCTTAGAAAACGCTGGGCTG
ATAAGCTCACTACTTTAATACATAATGAGTTAAAAGAGCTTTACATGGCAAAAACCGTGTTCGAAATTCGGTTTGAATCG
ATTTTACCTCATTTTTCAAAAAATGGTGTAGATCACGTGGAGTTCTATATTTCCACCAATCCTGGTGAACCGTTAAAGCC
GTTATCTAAGATTGCCTCTGGCGGGGAGCTTTCAAGAATTATGCTGGCGCTTAAGAGTATTTTTTCAAAGCATCAAGGAG
TTACTTCGATTATATTTGATGAGGTAGATACAGGAGTCAGCGGCAGAGTGGCTCAGTCAATTGCCGAAAAGATTTATAAT
GTTGCTGTTGATTCACAGGTACTATGTATTTCCCATTTACCACAAGTAGCTGCGATGGCTGATACTCATCTTTTTATTTC
TAAGGTTACGGAAGGCGGCCGTACAAAAACCTCAGTTAATCCACTTAGTATTGAAGAAAAAATAAAGGAAATAGGGCGTA
TGATTTCAGGTGCTGAAATTACGGATTTAACAAAGAAACACGCGGAGGAATTGTTGTTTTTAGCTTCAGAAAACAAAAAA
ATTGTAAAGCTTCCCAATTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.035

100

0.608

Multiple sequence alignment