Detailed information NTG0110671

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: HW11_RS14530
• Genome accession: NZ_CP008873
• Coordinates: 3147313..3150162 (-)
• Length: 949 a.a.
• NCBI ID: WP_023093170.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain F9670
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3142313..3155162

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HW11_RS14515 (HW11_14630)	trxC	3143518..3143958 (-)	441	WP_023093173.1	thioredoxin TrxC	-
HW11_RS14520 (HW11_14635)	ftsH	3143955..3145838 (-)	1884	WP_023093172.1	ATP-dependent zinc metalloprotease FtsH	-
HW11_RS14525 (HW11_14640)	cls	3145866..3147295 (-)	1430	Protein_2891	cardiolipin synthase	-
HW11_RS14530 (HW11_14645)	clpC	3147313..3150162 (-)	2850	WP_023093170.1	heat shock survival AAA family ATPase ClpK	Regulator
HW11_RS14535 (HW11_14650)	-	3150256..3150825 (-)	570	WP_008906266.1	Hsp20/alpha crystallin family protein	-
HW11_RS14540 (HW11_14655)	-	3150861..3151142 (-)	282	WP_031642515.1	helix-turn-helix domain-containing protein	-
HW11_RS33600	-	3151487..3151720 (+)	234	Protein_2895	IS110 family transposase	-
HW11_RS31730	-	3151842..3152271 (-)	430	Protein_2896	IS66 family transposase	-
HW11_RS31735	-	3152411..3152983 (+)	573	Protein_2897	LysR family transcriptional regulator	-
HW11_RS14555 (HW11_14670)	-	3152980..3153888 (-)	909	WP_023093167.1	LysR family transcriptional regulator	-
HW11_RS32565	-	3154058..3154489 (-)	432	WP_170288398.1	ExbD/TolR family protein	-

Sequence

Protein

• Length: 949 a.a.
• Molecular weight: 104564.66 Da
• Isoelectric Point: 5.9683

>NTDB_id=110671 HW11_RS14530 WP_023093170.1 3147313..3150162(-) (clpC) [Pseudomonas aeruginosa strain F9670]
MARKQCQVCGQPATVRVEANLNGRHSTMLLCDDHYRQLVRQQKRTVSPLEALFGSRSGLFEDFLGSDFFRIGDDAPSMAA
DTDEVVDASFGEPAPAGTGTARRRGSGLASRISEQSEALLQEAARHAAEFGRAEVDTEHLLLALSDSDVVKTILGQFKIK
VDDLKRQIESEAKRGDKPFEGEIGVSPRVKDALSRAFVASNELGHSYVGPEHFLIGLAEEGEGLAANLLRRYGLTPQALR
QQVSKVVGKGAEDGRAETPTNTPELDKYSRDLTKMAREGKLDPVIGRAQEIETTIEVLARRKKNNPVLIGEPGVGKTAIV
EGLAQRMVAGEVPETLRDKRLVELNINAMVAGAKYRGEFEERVQKVLKEVTEHQGELILFIDEVHTIVGAGQGGGEGGLD
VANVFKPMMARGELNLIGATTLNEYQKYIEKDAALERRFQPVMVPEPTVAQTMMILRGLRDTFEAHHKVSITEDAIIAAA
ELSDRYITARFLPDKAIDLLDQAAARVKLSATARPVAVQELESELHQLRREQDYVASRKQYDKAAELGKRIEAKEAELKK
LVEDWERERASGSAEVKAEHVAQIVSRLTGIPVNELTVEEREKLLHLEQRLHERLVGQDEAVRAVADAVRLSRAGLREGS
KPVATFLFLGPTGVGKTELAKALAESIYGDEGALLRIDMSEYGERHTVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLL
LDEIEKAHPDVYNILLQVFDDGRLTDGKGRVVDFTNAIIIATSNLGSDIIQRRLKARGAAGEEYEKTKSEVMDVLRGHFR
PEFLNRIDEIIVFHALGKEEIRHIVGLQLDRVARNAASQGVTLTFDQTLIDHFAEEGYKPEFGARELKRLIRSELETALA
REMLGGGIGKGDHASARWDEKAERVVFERKEPPVKPVEPEKPDAAKVAEAPSSDESKATRKKKPAGGQS

Nucleotide

• Length: 2850 bp

>NTDB_id=110671 HW11_RS14530 WP_023093170.1 3147313..3150162(-) (clpC) [Pseudomonas aeruginosa strain F9670]
ATGGCCAGAAAACAATGCCAAGTTTGCGGCCAGCCCGCCACGGTGCGGGTGGAAGCCAATCTCAATGGACGCCACAGCAC
CATGCTGTTGTGTGACGATCACTATCGCCAACTGGTGCGCCAGCAAAAGCGCACCGTCTCACCGCTGGAAGCCTTGTTCG
GCTCGCGCAGCGGGCTGTTCGAAGACTTCCTTGGCAGCGACTTCTTCCGCATCGGTGACGACGCACCGTCCATGGCGGCC
GATACCGACGAGGTCGTCGATGCCTCGTTCGGCGAACCCGCCCCGGCCGGTACGGGCACCGCGCGCCGTCGCGGCAGTGG
GCTCGCCAGCCGTATCAGCGAACAGTCCGAGGCCCTGTTGCAGGAGGCCGCCCGACACGCTGCAGAGTTCGGGCGCGCCG
AAGTCGATACCGAACACCTGCTGCTGGCGCTATCCGACAGCGACGTGGTCAAGACCATCCTGGGGCAGTTCAAGATCAAG
GTCGATGACCTCAAGCGCCAGATCGAATCCGAAGCCAAGCGCGGCGATAAGCCGTTCGAGGGCGAGATCGGCGTGTCGCC
CCGGGTCAAGGACGCGCTCAGCCGTGCTTTCGTGGCCTCCAACGAACTCGGCCACTCTTATGTCGGGCCGGAGCATTTCC
TGATCGGGCTCGCCGAGGAAGGCGAAGGTTTGGCGGCCAACCTGCTGCGCCGTTACGGCCTCACGCCGCAAGCGCTGCGC
CAGCAGGTAAGCAAGGTGGTCGGCAAAGGGGCCGAGGATGGCCGCGCCGAGACGCCGACCAACACGCCGGAACTCGACAA
GTATTCGCGCGACCTCACCAAGATGGCGCGCGAGGGCAAGCTCGATCCGGTCATCGGCCGCGCGCAGGAGATCGAGACGA
CCATCGAAGTGCTGGCCCGGCGCAAGAAGAACAACCCGGTGCTGATCGGCGAGCCCGGCGTCGGCAAGACCGCCATCGTC
GAAGGGCTGGCGCAGCGCATGGTCGCCGGCGAAGTGCCCGAGACGCTGCGCGACAAGCGCCTGGTGGAACTCAACATCAA
TGCCATGGTGGCCGGCGCCAAGTACCGCGGCGAGTTCGAGGAGCGCGTGCAGAAGGTGCTCAAGGAAGTGACCGAGCACC
AGGGTGAGCTGATTCTCTTCATCGACGAGGTGCACACCATCGTCGGTGCCGGCCAGGGTGGCGGCGAAGGCGGGCTGGAC
GTGGCCAACGTGTTCAAGCCGATGATGGCGCGCGGCGAACTGAACCTGATCGGCGCCACCACGCTCAACGAGTATCAGAA
GTACATCGAGAAGGACGCCGCGCTGGAGCGTCGCTTCCAGCCGGTGATGGTGCCCGAGCCGACCGTGGCGCAGACCATGA
TGATCCTGCGCGGCCTGCGCGACACCTTCGAGGCGCACCACAAGGTCAGCATCACCGAGGATGCGATCATCGCCGCCGCC
GAGTTGTCGGACCGTTACATCACCGCGCGCTTTTTGCCCGACAAGGCCATCGACCTGCTCGACCAGGCAGCCGCACGCGT
GAAGCTGTCGGCCACGGCGCGCCCGGTGGCGGTGCAAGAGCTGGAGTCCGAACTGCATCAGTTGCGGCGTGAGCAGGACT
ATGTGGCTTCGCGCAAGCAGTACGACAAGGCCGCCGAGCTCGGCAAGCGCATCGAGGCCAAAGAGGCCGAACTAAAGAAG
CTCGTCGAGGATTGGGAGCGCGAGCGCGCCTCGGGCAGCGCCGAGGTCAAGGCAGAGCACGTGGCGCAGATCGTCTCGCG
GCTGACCGGCATCCCGGTCAATGAGCTGACGGTGGAAGAACGCGAGAAGCTGCTGCATCTGGAACAGCGGCTGCATGAGC
GCCTGGTGGGACAGGACGAAGCAGTACGTGCCGTGGCCGATGCCGTGCGGCTGTCGCGCGCGGGCCTGCGCGAAGGCAGC
AAGCCGGTGGCGACTTTTCTGTTCCTCGGGCCGACCGGCGTGGGCAAGACCGAGCTCGCCAAGGCGCTGGCCGAGTCCAT
CTATGGCGATGAAGGTGCGCTGCTGCGCATCGACATGTCCGAGTACGGGGAACGCCATACCGTGGCACGCCTGGTGGGCG
CGCCTCCGGGTTATGTGGGCTATGACGAGGGCGGCCAGCTCACCGAGAAGGTGCGTCGCAAGCCCTACAGCGTGTTGCTG
CTGGACGAGATCGAGAAGGCTCACCCCGACGTCTACAACATCCTGCTGCAGGTGTTCGACGACGGGCGGCTCACCGACGG
CAAGGGCCGGGTGGTGGATTTCACCAATGCCATCATCATCGCCACCTCGAATTTGGGCTCGGACATCATCCAGCGTCGGC
TGAAGGCCCGTGGCGCCGCCGGCGAGGAATACGAGAAGACCAAGTCCGAGGTGATGGACGTGCTGCGCGGACACTTCCGC
CCCGAGTTCCTCAACCGCATCGACGAGATCATCGTCTTCCATGCGCTGGGCAAGGAGGAGATCCGCCATATCGTCGGCCT
GCAGCTCGATCGTGTGGCCCGCAACGCCGCCAGCCAGGGCGTGACGCTGACCTTCGATCAGACCTTGATCGATCACTTCG
CGGAGGAAGGCTACAAGCCGGAATTCGGCGCGCGCGAGCTCAAGCGGCTGATCCGCAGCGAGCTGGAGACTGCGCTGGCG
CGCGAGATGCTCGGTGGCGGCATCGGCAAGGGCGATCACGCCAGCGCTCGCTGGGATGAAAAGGCCGAGCGGGTGGTTTT
CGAGCGCAAGGAGCCACCAGTGAAGCCGGTCGAGCCTGAAAAGCCTGATGCCGCGAAAGTGGCAGAGGCGCCGTCGAGCG
ACGAAAGCAAGGCTACGCGCAAGAAAAAGCCGGCGGGCGGCCAATCTTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (816-894)

• AAA lid domain (AAA_lid_9) (449-547)

• ATPase family associated with various cellular activities (AAA) (AAA) (307-440)

• AAA domain (Cdc48 subfamily) (AAA_2) (641-810)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (123-171)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (199-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	50.943	83.772	0.427
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.881	85.248	0.374
clpC	Streptococcus thermophilus LMD-9	41.959	87.144	0.366
clpC	Streptococcus thermophilus LMG 18311	41.99	86.828	0.365
clpC	Streptococcus mutans UA159	42.105	86.091	0.362