Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACGHCW_RS05075 Genome accession   NZ_AP031614
Coordinates   1077923..1079326 (+) Length   467 a.a.
NCBI ID   WP_005444697.1    Uniprot ID   -
Organism   Vibrio harveyi strain TUMSAT-2019     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1072923..1084326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHCW_RS05070 (VHTUMSATKI_09240) uvrB 1075567..1077597 (+) 2031 WP_005444695.1 excinuclease ABC subunit UvrB -
  ACGHCW_RS05075 (VHTUMSATKI_09250) luxO 1077923..1079326 (+) 1404 WP_005444697.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ACGHCW_RS05080 (VHTUMSATKI_09260) luxU 1079323..1079667 (+) 345 WP_005444699.1 quorum-sensing phosphorelay protein LuxU -
  ACGHCW_RS05085 (VHTUMSATKI_09270) - 1079782..1080675 (-) 894 WP_005444701.1 YvcK family protein -
  ACGHCW_RS05090 (VHTUMSATKI_09280) moaA 1080973..1081962 (+) 990 WP_005444703.1 GTP 3',8-cyclase MoaA -
  ACGHCW_RS05095 (VHTUMSATKI_09290) moaB 1082064..1082576 (+) 513 WP_005433210.1 molybdenum cofactor biosynthesis protein B -
  ACGHCW_RS05100 (VHTUMSATKI_09300) moaC 1082603..1083079 (+) 477 WP_050908866.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACGHCW_RS05105 (VHTUMSATKI_09310) moaD 1083079..1083336 (+) 258 WP_005444716.1 molybdopterin synthase sulfur carrier subunit -
  ACGHCW_RS05110 (VHTUMSATKI_09320) moaE 1083338..1083793 (+) 456 WP_009702831.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52150.57 Da        Isoelectric Point: 5.8838

>NTDB_id=110669 ACGHCW_RS05075 WP_005444697.1 1077923..1079326(+) (luxO) [Vibrio harveyi strain TUMSAT-2019]
MQQITEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFIRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPVVRQS
ASKFIEPDILTVSDIMPLWMTEKMAIEQAIQACDGNIPRAAGYLDVSPSTIYRKLQAWNSRDEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=110669 ACGHCW_RS05075 WP_005444697.1 1077923..1079326(+) (luxO) [Vibrio harveyi strain TUMSAT-2019]
ATGCAACAAATAACAGAAGGTCAAAAGTCTCGTTATCTACTAATGGTAGAAGACACCGCATCTGTCGCGGCATTGTACCG
TTCTTACCTAACGCCACTCGGCATCGATATCAATATTGTTGGTACAGGCAGAGACGCAATCGAAAGTCTGAACCACCGTA
TTCCTGATCTTATTCTGCTCGATCTTCGTCTACCTGATATGACGGGGATGGATGTATTGCACGCAGTGAAGAAAAGTCAT
CCAGACGTGCCAATTATCTTTATGACTGCCCATGGCTCTATCGATACTGCGGTAGAAGCAATGCGTCATGGTTCTCAAGA
TTTCTTAATTAAACCATGTGAAGCTGACCGTTTACGCGTCACGGTAAATAATGCGATCCGTAAAGCTACCAAGCTTAAAA
ATGAAGCGGATAATCCGGGCAACCAAAATTACCAAGGCTTTATCGGCAGTAGCCAAACCATGCAGCAGGTTTACCGCACT
ATTGACTCGGCGGCGAGCAGTAAAGCAAGTATTTTCATCACGGGTGAAAGTGGTACTGGTAAAGAGGTGTGTGCCGAGGC
AATTCACGCAGCAAGCAAACGTGGTGATAAGCCGTTTATCGCCATTAACTGTGCTGCCATCCCTAAAGATCTGATTGAGA
GCGAGCTATTTGGTCACGTAAAAGGTGCATTTACTGGCGCGGCAAATGACCGACAAGGTGCGGCTGAGCTTGCTGACGGT
GGCACTTTGTTTCTTGATGAGCTTTGTGAGATGGACCTAGACCTCCAGACAAAGTTACTAAGATTCATTCAAACGGGGAC
GTTCCAAAAAGTCGGTTCTTCGAAGATGAAGAGTGTGGACGTACGTTTTGTTTGCGCGACGAACCGCGACCCTTGGAAGG
AAGTGCAAGAAGGGCGTTTTCGTGAAGACTTGTACTATCGTTTGTACGTGATCCCATTGCACCTTCCACCGCTGCGTGAG
CGTGGCGAAGATGTAATTGAGATTGCTTATTCGTTGCTTGGTTACATGTCTCACGAAGAAGGCAAAAGCTTCATCCGCTT
CTCGCAAGAGGTGATTGATAGGTTCAATAGTTATGAATGGCCGGGTAACGTTCGTCAGTTGCAAAACGTACTGCGCAACA
TTGTGGTATTGAACAACGGCAAAGAGATTACGTTAGACATGCTGCCACCGCCGTTGAACCAGCCAGTGGTTCGTCAATCG
GCATCAAAATTTATTGAACCTGACATTTTGACGGTGTCAGACATTATGCCGCTTTGGATGACTGAGAAAATGGCCATCGA
GCAGGCGATTCAAGCGTGTGATGGCAATATTCCACGCGCTGCGGGCTACTTAGATGTCAGCCCATCGACGATTTATCGCA
AGTTGCAAGCTTGGAATAGCAGGGACGAAAAACAAAACGTATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.83

95.931

0.833

Multiple sequence alignment