Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACN6MT_RS03550 Genome accession   NZ_CP183883
Coordinates   750423..751805 (-) Length   460 a.a.
NCBI ID   WP_034676005.1    Uniprot ID   -
Organism   Neobacillus niacini strain BE6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 745423..756805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MT_RS03530 (ACN6MT_03530) ispF 746846..747328 (-) 483 WP_034676014.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACN6MT_RS03535 (ACN6MT_03535) ispD 747330..748019 (-) 690 WP_419954801.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACN6MT_RS03540 (ACN6MT_03540) - 748062..749147 (-) 1086 WP_419954802.1 PIN/TRAM domain-containing protein -
  ACN6MT_RS03545 (ACN6MT_03545) disA 749346..750419 (-) 1074 WP_419954803.1 DNA integrity scanning diadenylate cyclase DisA -
  ACN6MT_RS03550 (ACN6MT_03550) radA 750423..751805 (-) 1383 WP_034676005.1 DNA repair protein RadA Machinery gene
  ACN6MT_RS03555 (ACN6MT_03555) clpC 751902..754343 (-) 2442 WP_034676002.1 ATP-dependent protease ATP-binding subunit ClpC -
  ACN6MT_RS03560 (ACN6MT_03560) - 754357..755430 (-) 1074 WP_419954804.1 protein arginine kinase -
  ACN6MT_RS03565 (ACN6MT_03565) - 755432..755980 (-) 549 WP_034675995.1 UvrB/UvrC motif-containing protein -
  ACN6MT_RS03570 (ACN6MT_03570) - 756009..756470 (-) 462 WP_034675992.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49904.50 Da        Isoelectric Point: 7.3694

>NTDB_id=1106689 ACN6MT_RS03550 WP_034676005.1 750423..751805(-) (radA) [Neobacillus niacini strain BE6]
MVKRKTKFMCQECGYESPKWLGKCPGCGEWNKMVEEVEVTGGNRRGAFAHSQGVSTLAAKPTPITAIESLSEPRILTDLN
ELNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSSQLANKGNQVLYISGEESLRQTKLRAERLGIKSENLLVYAETNLDE
ISRTIENTNPSFVIIDSIQTVFHPEVTSAPGSVSQVRECTSELMRIGKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVL
YFEGERHHTYRILRAVKNRFGSTNEMGIFEMKEFGLDEVANPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALISPT
SFGNPRRMATGIDHNRVPLLMAVLEKRMGMLLQNQDAYLKVAGGVKLDEPAIDLAIVVSIASSFRDKPTRATDCIIGEVG
LTGEVRRVSRIEQRVQEAAKLGFERVILPANNLSGWQGPKGVELIGVSTVAEALKAVLGV

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=1106689 ACN6MT_RS03550 WP_034676005.1 750423..751805(-) (radA) [Neobacillus niacini strain BE6]
ATGGTCAAACGAAAAACGAAGTTCATGTGTCAGGAGTGTGGGTATGAATCTCCTAAATGGTTAGGAAAATGCCCAGGCTG
CGGAGAATGGAACAAAATGGTGGAGGAAGTTGAGGTAACTGGCGGAAATAGAAGGGGCGCCTTCGCTCATTCTCAAGGGG
TCTCAACATTGGCAGCTAAACCAACGCCTATTACTGCCATTGAATCCTTGTCAGAACCGAGAATTCTTACCGATTTAAAT
GAACTTAATCGAGTCTTAGGCGGTGGAGTGGTTAAAGGATCACTAGTTCTAATCGGTGGTGACCCTGGCATCGGTAAATC
AACTCTCCTTTTACAGGTATCCTCTCAACTTGCGAATAAAGGCAATCAGGTCTTATACATATCAGGCGAGGAATCGCTGA
GGCAAACAAAGCTTCGAGCTGAAAGACTGGGAATTAAATCTGAAAATCTTCTCGTGTATGCTGAGACCAATCTAGATGAA
ATTAGTCGAACGATTGAAAATACAAATCCAAGTTTTGTGATTATTGATTCCATTCAGACGGTTTTCCATCCGGAAGTAAC
GTCGGCACCAGGGAGCGTCTCACAAGTTCGTGAATGTACATCAGAATTAATGAGGATTGGGAAAACAAAGGGCATTGCTA
TCTTTATTGTTGGTCATGTAACAAAAGAAGGGTCCATAGCTGGACCAAGGCTGCTCGAGCATATGGTAGATACTGTTCTC
TACTTCGAAGGGGAAAGGCACCATACATATCGTATTTTACGTGCTGTAAAAAACCGTTTTGGATCAACCAATGAAATGGG
TATTTTTGAAATGAAGGAATTTGGACTGGATGAGGTTGCAAATCCATCGGAAATATTCCTTGAAGAGAGGTCGCAAGGCG
CAGCAGGCTCCACTGTCGTTGCTTCAATGGAAGGGACACGTCCTGTACTTGTCGAAATTCAGGCTTTAATATCTCCGACA
AGCTTTGGAAACCCAAGAAGAATGGCAACAGGGATTGACCATAATCGTGTTCCATTATTAATGGCAGTTTTAGAGAAGCG
GATGGGAATGCTTCTTCAGAATCAAGATGCCTATCTAAAGGTCGCAGGAGGCGTGAAGCTAGATGAACCAGCCATCGATT
TAGCGATCGTTGTAAGTATCGCCTCAAGCTTTCGTGATAAACCTACGAGGGCAACGGACTGTATTATAGGAGAGGTTGGG
TTAACAGGAGAGGTGCGAAGAGTCTCGAGAATTGAACAGCGTGTTCAGGAAGCTGCAAAGTTAGGGTTCGAACGGGTTAT
TCTGCCTGCCAATAATTTGAGCGGCTGGCAGGGTCCGAAAGGTGTGGAACTAATCGGGGTTTCGACTGTAGCAGAAGCTT
TAAAAGCAGTGTTAGGGGTGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(70-224)

Subunit ChlI of Mg-chelatase (ChlI)

(366-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.174

100

0.772
  radA Streptococcus mitis NCTC 12261

62.963

99.783

0.628
  radA Streptococcus pneumoniae Rx1

62.963

99.783

0.628
  radA Streptococcus pneumoniae D39

62.963

99.783

0.628
  radA Streptococcus pneumoniae R6

62.963

99.783

0.628
  radA Streptococcus pneumoniae TIGR4

62.963

99.783

0.628
  radA Streptococcus mitis SK321

62.745

99.783

0.626

Multiple sequence alignment