Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACN6MV_RS23360 Genome accession   NZ_CP183882
Coordinates   5169195..5169626 (+) Length   143 a.a.
NCBI ID   WP_419886801.1    Uniprot ID   -
Organism   Paenibacillus sp. B-A-8     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 5164195..5174626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MV_RS23330 (ACN6MV_23325) - 5164906..5165064 (+) 159 WP_197069706.1 hypothetical protein -
  ACN6MV_RS23335 (ACN6MV_23330) - 5165067..5165402 (-) 336 WP_042130171.1 YolD-like family protein -
  ACN6MV_RS23340 (ACN6MV_23335) - 5165781..5166341 (-) 561 WP_419884991.1 hypothetical protein -
  ACN6MV_RS23345 (ACN6MV_23340) - 5166460..5166948 (+) 489 WP_341114448.1 PH domain-containing protein -
  ACN6MV_RS23350 (ACN6MV_23345) - 5167027..5168502 (-) 1476 WP_419884992.1 glycosyl hydrolase -
  ACN6MV_RS23355 (ACN6MV_23350) - 5168671..5169087 (-) 417 WP_076117456.1 cytidine deaminase -
  ACN6MV_RS23360 (ACN6MV_23355) nucA/comI 5169195..5169626 (+) 432 WP_419886801.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACN6MV_RS23365 (ACN6MV_23360) - 5169706..5169852 (-) 147 WP_156114850.1 hypothetical protein -
  ACN6MV_RS23370 (ACN6MV_23365) - 5170003..5170179 (+) 177 WP_076098563.1 YjfB family protein -
  ACN6MV_RS23375 (ACN6MV_23370) - 5170330..5170863 (+) 534 WP_419886802.1 ImmA/IrrE family metallo-endopeptidase -
  ACN6MV_RS23380 (ACN6MV_23375) - 5170943..5171104 (+) 162 WP_170880221.1 hypothetical protein -
  ACN6MV_RS23385 (ACN6MV_23380) - 5171475..5171807 (+) 333 WP_375103675.1 DUF3139 domain-containing protein -
  ACN6MV_RS23390 (ACN6MV_23385) - 5171987..5172481 (+) 495 WP_419884993.1 RNA polymerase sigma factor -
  ACN6MV_RS23395 (ACN6MV_23390) - 5172478..5173467 (+) 990 WP_419884994.1 hypothetical protein -
  ACN6MV_RS23400 (ACN6MV_23395) - 5173751..5174098 (+) 348 WP_341114456.1 hypothetical protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15929.69 Da        Isoelectric Point: 4.2779

>NTDB_id=1106673 ACN6MV_RS23360 WP_419886801.1 5169195..5169626(+) (nucA/comI) [Paenibacillus sp. B-A-8]
MQKLLTSLIIVVLLAFGGYWYEQNGDPAAPSSTSDSEVVQLIFPSDRYPETAKHIQDAIAKGESATCTINREQAEENRKE
SLRGIPTKKGYDRDEWPMAMCDEGGEGADIEYITPKDNRGAGSWVGNQLEDYADGTRVEFMFK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1106673 ACN6MV_RS23360 WP_419886801.1 5169195..5169626(+) (nucA/comI) [Paenibacillus sp. B-A-8]
ATACAGAAATTACTCACCAGTCTCATCATTGTTGTGTTACTCGCTTTCGGCGGTTACTGGTATGAACAGAACGGAGACCC
GGCAGCCCCCTCGTCCACATCCGATTCAGAAGTTGTTCAGCTCATCTTCCCATCAGATCGTTATCCTGAGACCGCCAAGC
ATATTCAGGATGCGATTGCCAAAGGGGAGTCTGCCACATGTACCATTAACCGTGAGCAGGCTGAAGAGAACCGCAAAGAA
TCCTTAAGAGGGATCCCTACAAAAAAAGGCTACGACCGCGACGAATGGCCCATGGCCATGTGTGATGAAGGCGGCGAAGG
GGCCGACATTGAATACATAACGCCAAAAGATAATCGCGGTGCAGGAAGCTGGGTTGGTAATCAGCTAGAAGATTATGCGG
ATGGAACCCGCGTAGAATTTATGTTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.932

72.028

0.497

Multiple sequence alignment