Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ACN6MY_RS18515 Genome accession   NZ_CP183879
Coordinates   3715675..3718089 (-) Length   804 a.a.
NCBI ID   WP_419881486.1    Uniprot ID   -
Organism   Peribacillus sp. B-H-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3710675..3723089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MY_RS18500 (ACN6MY_18500) - 3713493..3714584 (-) 1092 WP_419881484.1 AI-2E family transporter -
  ACN6MY_RS18505 (ACN6MY_18505) - 3714702..3714890 (-) 189 WP_419884216.1 hypothetical protein -
  ACN6MY_RS18510 (ACN6MY_18510) - 3714907..3715386 (-) 480 WP_419881485.1 PRC-barrel domain-containing protein -
  ACN6MY_RS18515 (ACN6MY_18515) recD2 3715675..3718089 (-) 2415 WP_419881486.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACN6MY_RS18520 (ACN6MY_18520) - 3718118..3718789 (-) 672 WP_419881487.1 tetratricopeptide repeat protein -
  ACN6MY_RS18525 (ACN6MY_18525) - 3719112..3719294 (-) 183 WP_419881488.1 hypothetical protein -
  ACN6MY_RS18530 (ACN6MY_18530) mnmA 3719542..3720657 (-) 1116 WP_419881489.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACN6MY_RS18535 (ACN6MY_18535) - 3720678..3721820 (-) 1143 WP_419881490.1 cysteine desulfurase family protein -
  ACN6MY_RS18540 (ACN6MY_18540) cymR 3721887..3722306 (-) 420 WP_419881491.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 804 a.a.        Molecular weight: 90129.64 Da        Isoelectric Point: 4.7080

>NTDB_id=1106646 ACN6MY_RS18515 WP_419881486.1 3715675..3718089(-) (recD2) [Peribacillus sp. B-H-3]
MGQQDSLDLFSEEKPFMKGRQLVTIFHNEGNMYSVVRIRVDETNLNYDEKEAVVTGYFPRIHEDETYTFYGILKEHPRFG
MQFHVEHFRKEMPQSKEGIINYLSSDLFKGIGKKTAESIVEAVGENAISKILAQPSLLDGIPKLSGEKAKAFYDTLIEHQ
GLEQVMIALNQYGFGPQLSMKIYQMYKQDTVSMLQSNPYKLVEDIEGIGFGRADELGYQLGIAGSHPDRIKAACLYTLES
QCLQEGNTYLEAEALLESVKKLLEENKRDRIEFTDISSEIVKLGEEGKIITEGVRVYLPSLYYSEKGIVTNIKRILGQTQ
YQDQFPESEFLLALGKLEERLGVDYAPAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYSELHGVSMEIKDYIKED
DPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFSHDEDNPINGRIVIIDETSMVDTWLAQQLFKALPDDVQL
ILVGDEDQLPSVGPGQVLKDLLGSNCVPTVALEHIYRQEEGSSIIELAHDIKRGSLPPDVEKQQGDRSFLKCSTGQISQV
IEKVVQNARKKGYTARDIQVLAPMYKGPAGIDALNKMLQEVFNSNENEKRRELKFGDVIFRTGDKVLQLVNQPENGVFNG
DMGEIVSILFAKENTDSVDKAIISFEGIEVSYTKQELSQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLIYTGI
TRSKEFLILCGEEDALRMGVERNNEIRKTTLLTRLQESMNENEDADNESIPAEISAETAEDYAAALMKTDPMIGMKNVTP
YDFM

Nucleotide


Download         Length: 2415 bp        

>NTDB_id=1106646 ACN6MY_RS18515 WP_419881486.1 3715675..3718089(-) (recD2) [Peribacillus sp. B-H-3]
ATGGGACAGCAGGATTCGCTGGATTTGTTCTCAGAGGAAAAACCGTTTATGAAGGGACGCCAGCTTGTCACTATTTTTCA
TAATGAAGGCAATATGTACTCGGTTGTGCGGATCCGTGTTGATGAGACCAATCTGAACTATGATGAAAAGGAAGCAGTTG
TGACTGGCTACTTCCCTCGTATTCATGAAGATGAGACCTATACTTTTTATGGGATTTTAAAAGAGCATCCTCGTTTCGGG
ATGCAGTTTCATGTCGAGCATTTCCGGAAAGAAATGCCGCAGTCGAAAGAAGGAATCATTAATTATTTATCAAGCGATCT
CTTTAAGGGAATCGGAAAAAAAACAGCCGAAAGCATCGTGGAGGCTGTCGGGGAGAACGCAATTTCAAAAATCCTTGCAC
AGCCTTCCCTGCTGGACGGAATCCCAAAGCTATCCGGTGAAAAGGCGAAGGCATTTTATGACACGCTGATTGAGCATCAG
GGGCTCGAACAGGTGATGATTGCCCTGAATCAATACGGATTTGGCCCGCAGCTGTCGATGAAGATTTATCAGATGTACAA
GCAGGACACTGTTTCCATGCTTCAAAGCAATCCCTACAAGCTTGTAGAAGATATTGAGGGGATTGGTTTCGGGCGTGCAG
ACGAGCTTGGATATCAGCTTGGAATAGCTGGTTCCCATCCGGACAGAATTAAGGCGGCCTGTTTATATACCCTTGAATCG
CAGTGTCTTCAGGAAGGCAATACATATCTTGAAGCGGAGGCACTCCTGGAAAGCGTCAAAAAACTTTTGGAAGAAAATAA
ACGGGATCGTATAGAATTTACTGATATTTCCTCGGAAATCGTCAAACTGGGAGAAGAAGGAAAGATTATCACGGAAGGCG
TGCGGGTTTACCTTCCATCTCTTTATTATTCTGAAAAAGGGATTGTAACCAATATTAAACGGATTCTCGGGCAAACCCAA
TATCAGGATCAGTTTCCGGAGTCTGAATTTCTGCTTGCCCTTGGAAAGCTTGAAGAGCGGCTTGGTGTAGACTATGCACC
TGCGCAAAAGGAAGCGATCCAGACGGCGCTACAGTCTCCGATGCTCATTTTGACTGGAGGGCCCGGTACAGGGAAAACTA
CGGTCATTAAAGGGATTGTTGAGCTATACAGTGAGCTTCATGGAGTGTCCATGGAAATAAAAGATTACATAAAAGAAGAT
GATCCATTTCCTTTTGTGCTTGCTGCTCCAACAGGGCGGGCGGCCAAAAGGATGGCAGAATCGACAGGGCTGCCTGCTGT
CACAATTCACCGCCTGCTTGGATGGAATGGAAGCGAGGGATTTTCCCATGATGAAGACAACCCGATCAATGGCCGGATTG
TCATCATCGACGAAACCTCCATGGTCGACACCTGGCTTGCACAGCAGCTGTTCAAGGCCCTTCCTGATGATGTCCAGCTG
ATTCTTGTCGGGGATGAAGACCAGCTGCCTTCTGTCGGACCAGGCCAGGTGCTGAAGGATCTGCTTGGGTCAAATTGTGT
GCCGACAGTGGCTCTTGAGCATATCTACCGCCAAGAAGAAGGTTCCTCCATCATTGAGCTTGCCCATGATATCAAGCGCG
GCAGCCTTCCTCCTGATGTGGAAAAGCAGCAGGGAGACCGTTCGTTTCTAAAATGCAGTACAGGCCAGATTTCACAGGTA
ATAGAAAAGGTTGTACAGAATGCCCGTAAAAAAGGATACACAGCAAGGGACATTCAGGTTTTGGCTCCGATGTACAAGGG
GCCTGCCGGAATTGACGCTTTAAACAAAATGCTCCAGGAAGTATTTAACAGCAATGAAAATGAAAAGCGCAGAGAATTAA
AGTTTGGCGATGTGATTTTCCGGACAGGTGACAAAGTCCTTCAGCTTGTGAACCAGCCGGAGAACGGAGTGTTTAATGGT
GATATGGGAGAAATCGTTTCTATCCTTTTTGCCAAGGAAAATACAGATTCTGTGGATAAGGCCATTATTTCCTTTGAAGG
AATTGAGGTCAGCTACACCAAACAGGAGCTTTCGCAGATTACTCACGCGTATTGCTGTTCGATCCATAAATCACAGGGAA
GCGAATTCCCGATCGTCATTCTTCCTGTTGTAAAAAGCTATTACCGAATGCTGCGGCGCAATCTGATTTATACAGGAATC
ACCCGGAGTAAGGAATTCCTTATCCTTTGCGGTGAAGAAGATGCCCTTCGCATGGGCGTGGAGCGGAATAATGAAATAAG
AAAAACAACACTGCTCACACGGCTCCAGGAAAGCATGAATGAAAATGAGGACGCTGATAACGAAAGCATACCTGCTGAGA
TTTCAGCAGAAACAGCTGAAGATTACGCAGCAGCGCTTATGAAAACAGATCCAATGATCGGAATGAAAAATGTCACGCCT
TATGACTTTATGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-663)

AAA domain (AAA_30)

(345-552)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

60.87

100

0.609

Multiple sequence alignment