Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACGHCW_RS02920 Genome accession   NZ_AP031614
Coordinates   589615..590133 (+) Length   172 a.a.
NCBI ID   WP_390502264.1    Uniprot ID   -
Organism   Vibrio harveyi strain TUMSAT-2019     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 584615..595133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHCW_RS02910 (VHTUMSATKI_04940) gshA 587335..588903 (+) 1569 WP_029790338.1 glutamate--cysteine ligase -
  ACGHCW_RS02915 (VHTUMSATKI_04950) - 588965..589528 (+) 564 WP_005448430.1 hypothetical protein -
  ACGHCW_RS02920 (VHTUMSATKI_04960) luxS 589615..590133 (+) 519 WP_390502264.1 S-ribosylhomocysteine lyase Regulator
  ACGHCW_RS02925 (VHTUMSATKI_04970) - 590225..591499 (-) 1275 WP_005446238.1 HlyC/CorC family transporter -
  ACGHCW_RS02930 (VHTUMSATKI_04980) - 591654..592448 (-) 795 WP_005446240.1 inner membrane protein YpjD -
  ACGHCW_RS02935 (VHTUMSATKI_04990) ffh 592662..594044 (+) 1383 WP_005446242.1 signal recognition particle protein -
  ACGHCW_RS02940 (VHTUMSATKI_05000) rpsP 594255..594503 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  ACGHCW_RS02945 (VHTUMSATKI_05010) rimM 594532..595080 (+) 549 WP_005446245.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19069.77 Da        Isoelectric Point: 4.8563

>NTDB_id=110662 ACGHCW_RS02920 WP_390502264.1 589615..590133(+) (luxS) [Vibrio harveyi strain TUMSAT-2019]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMQKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=110662 ACGHCW_RS02920 WP_390502264.1 589615..590133(+) (luxS) [Vibrio harveyi strain TUMSAT-2019]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTTTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCAGAAAGAGTTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.38

99.419

0.849

Multiple sequence alignment