Detailed information NTG1106617

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: ACN6MY_RS02515
• Genome accession: NZ_CP183879
• Coordinates: 541908..543299 (+)
• Length: 463 a.a.
• NCBI ID: WP_071351418.1
• Uniprot ID: A0A1S2R2U0
• Organism: Peribacillus sp. B-H-3
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 536908..548299

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACN6MY_RS02495 (ACN6MY_02495)	-	537101..537562 (+)	462	WP_071351422.1	CtsR family transcriptional regulator	-
ACN6MY_RS02500 (ACN6MY_02500)	-	537582..538136 (+)	555	WP_419882642.1	UvrB/UvrC motif-containing protein	-
ACN6MY_RS02505 (ACN6MY_02505)	-	538133..539233 (+)	1101	WP_419882643.1	protein arginine kinase	-
ACN6MY_RS02510 (ACN6MY_02510)	clpC	539230..541668 (+)	2439	WP_419882644.1	ATP-dependent protease ATP-binding subunit ClpC	-
ACN6MY_RS02515 (ACN6MY_02515)	radA	541908..543299 (+)	1392	WP_071351418.1	DNA repair protein RadA	Machinery gene
ACN6MY_RS02520 (ACN6MY_02520)	disA	543302..544375 (+)	1074	WP_419882645.1	DNA integrity scanning diadenylate cyclase DisA	-
ACN6MY_RS02525 (ACN6MY_02525)	-	544602..545693 (+)	1092	WP_419882646.1	PIN/TRAM domain-containing protein	-
ACN6MY_RS02530 (ACN6MY_02530)	ispD	545714..546418 (+)	705	WP_419882647.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACN6MY_RS02535 (ACN6MY_02535)	ispF	546546..547025 (+)	480	WP_071351414.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 49917.28 Da
• Isoelectric Point: 7.3283

>NTDB_id=1106617 ACN6MY_RS02515 WP_071351418.1 541908..543299(+) (radA) [Peribacillus sp. B-H-3]
MAAKKKTKFMCQSCGYESAKWMGKCPGCGEWNQMVEEVEIVKPARRGAFSHSDPAGLGAGRQKAAPITTIETSQEPRIAT
DLGELNRALGGGIVQGSLVLIGGDPGIGKSTLLLQVSSQLARKQKKVLYISGEESVKQTKLRADRLGAASENLFVYSETD
MDYIQQAISDVQPDLVIIDSIQTVFQSEVTSAPGSVSQVRECTSTLMRIAKTTGVAIFIVGHVTKEGAIAGPRLLEHMVD
TVLYFEGERHHTYRIIRAVKNRFGSTNEMGIFEMKENGLEEVGNPSEIFLEERSQGTSGSTVVASMEGTRPVLVEIQALI
SPTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVSVSIASSFRDKPTKPSDCLIG
EVGLTGEVRRVSRIEQRVQEAAKLGFERIIIPSNNIGGWSVPKGIEIVGVSTVAEALKYALGG

Nucleotide

• Length: 1392 bp

>NTDB_id=1106617 ACN6MY_RS02515 WP_071351418.1 541908..543299(+) (radA) [Peribacillus sp. B-H-3]
ATGGCTGCAAAAAAGAAGACAAAATTTATGTGCCAATCCTGCGGTTATGAATCTGCAAAATGGATGGGCAAATGCCCGGG
GTGCGGTGAATGGAATCAGATGGTGGAGGAAGTTGAAATCGTCAAACCCGCCAGAAGAGGCGCTTTTTCGCATTCCGACC
CTGCCGGATTGGGAGCTGGCCGCCAAAAGGCTGCACCTATAACTACCATTGAAACATCACAGGAGCCCCGGATTGCCACT
GACTTGGGAGAGCTGAACAGGGCGCTTGGCGGAGGAATTGTCCAAGGTTCACTGGTGCTGATAGGAGGGGACCCTGGAAT
CGGAAAGTCCACTCTGTTGCTGCAGGTATCTTCACAATTGGCGAGAAAACAAAAAAAGGTTCTTTATATATCGGGAGAAG
AATCCGTTAAGCAGACCAAGCTTAGAGCGGATCGTCTCGGGGCCGCTTCAGAAAATTTATTTGTTTATTCGGAAACAGAT
ATGGATTACATTCAGCAGGCCATTAGCGATGTTCAGCCTGACCTTGTCATAATAGATTCGATTCAGACAGTCTTTCAATC
TGAAGTAACATCTGCCCCTGGCAGCGTTTCTCAGGTCCGAGAGTGCACTTCCACGCTGATGCGGATTGCCAAGACAACAG
GTGTTGCCATTTTTATTGTCGGCCATGTGACGAAAGAAGGAGCAATTGCCGGTCCCCGGCTATTAGAGCATATGGTGGAT
ACTGTCCTGTATTTTGAAGGAGAGCGGCATCATACCTACCGGATCATCAGGGCGGTTAAAAACAGATTCGGTTCTACAAA
TGAAATGGGTATTTTTGAAATGAAGGAAAACGGGCTTGAAGAAGTCGGAAATCCGTCGGAAATATTTTTGGAGGAGCGCT
CACAAGGCACATCCGGCTCCACGGTTGTTGCTTCCATGGAAGGAACCCGTCCTGTACTCGTAGAAATTCAGGCGCTAATT
TCACCTACCAGCTTCGGGAATCCAAGGAGAATGGCAACAGGCATTGACCATAACCGGGTTTCTCTATTAATGGCTGTTTT
GGAGAAAAGGGTTGGACTGCTTCTGCAGAACCAGGATGCTTACTTAAAGGTCGCTGGCGGAGTAAAGCTGGATGAACCGG
CCATTGACCTCGCTGTATCGGTCAGCATTGCCTCCAGTTTCCGTGATAAACCGACAAAGCCATCTGACTGCCTGATTGGC
GAAGTGGGGCTTACAGGGGAAGTCAGAAGGGTTTCACGCATTGAACAGCGGGTGCAGGAAGCTGCTAAGCTTGGCTTTGA
ACGCATTATCATCCCGTCGAATAACATAGGCGGATGGAGTGTTCCAAAAGGAATAGAAATCGTAGGGGTATCAACTGTGG
CGGAGGCTCTTAAATATGCTTTAGGAGGGTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (78-227)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-36)

• Subunit ChlI of Mg-chelatase (ChlI) (370-435)

3D structure

• AlphaFold DB: A0A1S2R2U0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	77.273	99.784	0.771
radA	Streptococcus pneumoniae Rx1	61.79	98.92	0.611
radA	Streptococcus pneumoniae D39	61.79	98.92	0.611
radA	Streptococcus pneumoniae R6	61.79	98.92	0.611
radA	Streptococcus pneumoniae TIGR4	61.79	98.92	0.611
radA	Streptococcus mitis NCTC 12261	61.79	98.92	0.611
radA	Streptococcus mitis SK321	61.572	98.92	0.609