Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACN6MY_RS00180 Genome accession   NZ_CP183879
Coordinates   27815..29206 (-) Length   463 a.a.
NCBI ID   WP_419882290.1    Uniprot ID   -
Organism   Peribacillus sp. B-H-3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 22815..34206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MY_RS00150 (ACN6MY_00150) flgL 23055..23918 (-) 864 WP_419882284.1 flagellar hook-associated protein FlgL -
  ACN6MY_RS00155 (ACN6MY_00155) flgK 23933..25510 (-) 1578 WP_419882285.1 flagellar hook-associated protein FlgK -
  ACN6MY_RS00160 (ACN6MY_00160) - 25586..26077 (-) 492 WP_419882286.1 flagellar protein FlgN -
  ACN6MY_RS00165 (ACN6MY_00165) flgM 26143..26406 (-) 264 WP_419882287.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACN6MY_RS00170 (ACN6MY_00170) - 26654..27058 (-) 405 WP_419882288.1 TIGR03826 family flagellar region protein -
  ACN6MY_RS00175 (ACN6MY_00175) - 27133..27822 (-) 690 WP_419882289.1 ComF family protein -
  ACN6MY_RS00180 (ACN6MY_00180) comFA 27815..29206 (-) 1392 WP_419882290.1 DEAD/DEAH box helicase Machinery gene
  ACN6MY_RS00185 (ACN6MY_00185) - 29300..30142 (-) 843 WP_419882291.1 DegV family protein -
  ACN6MY_RS00190 (ACN6MY_00190) - 30717..31403 (-) 687 WP_071351782.1 response regulator -
  ACN6MY_RS00195 (ACN6MY_00195) - 31461..32603 (-) 1143 WP_419884267.1 sensor histidine kinase -
  ACN6MY_RS00200 (ACN6MY_00200) - 33340..33972 (+) 633 WP_419882292.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52105.43 Da        Isoelectric Point: 9.1479

>NTDB_id=1106601 ACN6MY_RS00180 WP_419882290.1 27815..29206(-) (comFA) [Peribacillus sp. B-H-3]
MKRDFPFLKELQKHLYGRSLLAEEIPFPLETIGYHQERGYVSGTPGVEKEKGRFVCRRCGCREQRLFYSFPCKRCGKMCS
YCRSCIMMGRVSECSLLYSWSGDHYSFAVPENPMLWDGTLSQGQKTASEAVAEAVTRNEEVLVWAVCGAGKTEVLFQGIE
TALKSKKRVCIATPRTDVVLELAPRLKQAFPGIDVAALYGGSEERHILAPLTVLTTHQLFRFQQAFDTIIIDEVDAFPYS
MDFSLQYAAEKSKKAQSSTIYLTATPSKKMQSSAKTGKLTHVTIPARYHRKPIPVPEMKWCGNYSKQFSKKVIPVPIKDW
LKKRLEAETPILLFFPSIVMMESVLPLFQHLHEGLISVHSQDPERKEKVTALRKGEVLGLLTTTILERGVTIPRLDVAVI
GAEHEVFSESALVQIAGRVGRSSQHYSGNVTFFHYGKTNSMMSAVHHISLMNSEAKKRGLLDE

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1106601 ACN6MY_RS00180 WP_419882290.1 27815..29206(-) (comFA) [Peribacillus sp. B-H-3]
ATGAAAAGAGATTTTCCTTTTTTAAAAGAGCTGCAAAAGCATTTATATGGCCGCTCGCTTCTTGCTGAAGAAATTCCCTT
CCCTCTTGAAACGATTGGGTATCATCAGGAACGGGGTTACGTTTCGGGCACTCCTGGTGTTGAAAAAGAAAAAGGTCGAT
TTGTTTGCAGGAGGTGCGGGTGCCGCGAGCAGAGGCTGTTTTATTCTTTTCCTTGCAAACGCTGCGGGAAGATGTGCAGC
TATTGTCGTTCCTGTATCATGATGGGACGGGTGAGCGAATGCTCGCTTTTGTACAGCTGGTCTGGTGATCATTACAGTTT
CGCTGTACCGGAAAATCCTATGCTATGGGATGGCACGCTTTCCCAAGGACAAAAAACAGCCTCTGAAGCAGTTGCAGAAG
CGGTAACCAGAAATGAAGAGGTTCTGGTCTGGGCAGTCTGCGGTGCAGGAAAAACAGAGGTATTGTTCCAGGGAATAGAA
ACAGCTCTGAAATCGAAAAAGCGAGTTTGTATTGCCACTCCGAGAACAGATGTCGTTTTAGAGCTAGCTCCCCGGTTGAA
GCAGGCTTTCCCTGGTATTGATGTGGCTGCACTATACGGGGGCAGCGAAGAGCGGCACATCCTTGCCCCTCTCACAGTCT
TGACCACCCATCAGTTATTCCGTTTTCAACAGGCCTTCGATACAATCATTATCGATGAAGTTGACGCGTTTCCTTACTCG
ATGGATTTCTCCCTTCAGTATGCTGCAGAAAAATCAAAAAAAGCTCAATCCTCAACCATTTACCTTACCGCCACTCCTTC
AAAAAAGATGCAAAGTTCAGCCAAAACAGGCAAGCTCACACATGTCACCATTCCGGCACGCTATCACCGAAAACCGATTC
CTGTTCCGGAGATGAAGTGGTGCGGCAATTACTCTAAACAATTTTCAAAAAAAGTAATTCCGGTACCTATCAAGGACTGG
TTGAAAAAACGCCTTGAGGCAGAAACACCGATTTTGCTGTTTTTCCCGAGCATTGTCATGATGGAAAGTGTTCTTCCTCT
TTTTCAGCATCTTCATGAAGGGTTAATTTCGGTACACTCTCAGGATCCGGAGAGAAAGGAAAAGGTAACAGCCCTCCGCA
AAGGGGAAGTACTCGGGCTTTTGACAACGACCATTCTCGAGCGGGGTGTCACGATTCCAAGGCTGGATGTGGCTGTAATT
GGAGCAGAGCATGAGGTGTTTTCAGAAAGTGCGCTTGTCCAGATTGCAGGCCGTGTCGGCAGAAGCTCACAGCATTACAG
CGGCAATGTTACTTTTTTTCATTACGGCAAAACAAACAGCATGATGTCGGCGGTGCACCACATTTCACTTATGAACTCTG
AGGCGAAGAAAAGAGGGCTGCTGGATGAGTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-267)

Helicase conserved C-terminal domain (Helicase_C)

(324-422)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

49.453

98.704

0.488

Multiple sequence alignment