Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACN6MX_RS19160 Genome accession   NZ_CP183878
Coordinates   3883527..3884897 (-) Length   456 a.a.
NCBI ID   WP_419960361.1    Uniprot ID   -
Organism   Psychrobacillus sp. BM2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3878527..3889897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MX_RS19140 (ACN6MX_19140) gltX 3879074..3880537 (-) 1464 WP_419960357.1 glutamate--tRNA ligase -
  ACN6MX_RS19145 (ACN6MX_19145) ispF 3880700..3881179 (-) 480 WP_419960358.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACN6MX_RS19150 (ACN6MX_19150) ispD 3881181..3881873 (-) 693 WP_419960359.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACN6MX_RS19155 (ACN6MX_19155) - 3881940..3883028 (-) 1089 WP_419960360.1 PIN/TRAM domain-containing protein -
  ACN6MX_RS19160 (ACN6MX_19160) radA 3883527..3884897 (-) 1371 WP_419960361.1 DNA repair protein RadA Machinery gene
  ACN6MX_RS19165 (ACN6MX_19165) - 3885648..3888095 (-) 2448 WP_419960362.1 ATP-dependent Clp protease ATP-binding subunit -
  ACN6MX_RS19170 (ACN6MX_19170) - 3888092..3889186 (-) 1095 WP_419960363.1 protein arginine kinase -
  ACN6MX_RS19175 (ACN6MX_19175) - 3889176..3889721 (-) 546 WP_419960364.1 UvrB/UvrC motif-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49802.34 Da        Isoelectric Point: 6.6961

>NTDB_id=1106591 ACN6MX_RS19160 WP_419960361.1 3883527..3884897(-) (radA) [Psychrobacillus sp. BM2]
MAKKKTKFMCNSCGYESAKWMGRCPGCGEWNTLVEETEVVSKGPKRSFQHSDGIAQKAIPIISVVTAEEPRVTTDFAELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLANKGERVLYISGEESIRQTKLRAERLGVTSAELYIYSETNLELIND
TIESVEPKFVIVDSIQTVHHPEVTSAPGSVSQVRECTAELMRIAKTKNVAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHTYRILRSQKNRFGSTNEIAIFEMIQSGLKEVLNPSELFLQERSHGAAGSAIVASMEGTRPILVEIQALVTQSSFN
YPKRMATGIDQNRVSLLMAVLEKRMGLLLQTQDAYIKVAGGVKLDEPAIDLAVLVSIVSSFRDTGVTPTDCFIGEIGLTG
EVRRVSRIEQRVQEAAKLGFKRAIVPASNLGGWDYPTGIQIIGIETVNEAMKEAFS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1106591 ACN6MX_RS19160 WP_419960361.1 3883527..3884897(-) (radA) [Psychrobacillus sp. BM2]
ATGGCTAAAAAGAAAACGAAATTTATGTGTAACTCATGTGGTTATGAATCCGCAAAATGGATGGGAAGATGTCCCGGGTG
CGGAGAATGGAACACTTTGGTAGAGGAAACTGAAGTAGTTTCCAAAGGCCCGAAACGCTCTTTCCAGCATTCAGATGGCA
TAGCGCAGAAGGCTATCCCAATTATTTCGGTGGTAACAGCTGAAGAACCACGGGTGACAACAGACTTTGCTGAATTGAAT
CGTGTTCTTGGTGGGGGGATTGTACCAGGATCGTTAGTATTAATAGGTGGAGATCCAGGAATAGGAAAGTCTACTCTTCT
TTTACAGGTTTCAGCATTACTTGCCAATAAGGGCGAGCGAGTGCTATATATTTCGGGTGAGGAATCCATCCGTCAGACAA
AGCTTCGTGCGGAACGTCTAGGGGTTACATCAGCAGAGCTTTATATCTACTCTGAAACCAATTTAGAACTAATTAATGAC
ACTATTGAGAGTGTGGAGCCTAAATTTGTCATTGTGGATTCTATTCAAACTGTTCATCACCCAGAAGTAACTAGTGCCCC
TGGGAGTGTATCGCAAGTTCGAGAATGTACAGCTGAGCTTATGCGAATAGCCAAAACGAAAAATGTAGCGATCTTTTTAG
TGGGCCATGTAACAAAAGAAGGTCAAATTGCGGGTCCGCGTATATTGGAACATATGGTGGACACTGTGTTGTATTTTGAA
GGAGAACGTCACCATACGTATCGTATTTTAAGATCTCAGAAAAATCGTTTTGGCTCAACAAATGAAATCGCCATTTTTGA
AATGATTCAATCGGGATTAAAAGAAGTACTTAATCCTTCTGAATTATTTTTGCAGGAGCGATCTCATGGGGCTGCAGGTT
CTGCAATTGTTGCCTCTATGGAAGGTACCAGACCTATTTTAGTAGAAATTCAAGCACTAGTGACTCAATCTAGCTTTAAT
TATCCAAAACGAATGGCTACTGGAATTGATCAAAACCGTGTTTCATTACTAATGGCAGTACTGGAAAAGAGAATGGGATT
ACTGCTTCAAACGCAAGATGCTTATATTAAAGTGGCTGGAGGAGTAAAATTAGATGAACCTGCAATCGATTTAGCCGTCC
TAGTAAGTATCGTCTCTAGTTTCCGGGATACAGGGGTTACACCGACAGACTGTTTTATCGGGGAAATTGGTTTAACTGGG
GAAGTGAGAAGGGTATCTAGGATTGAACAGCGCGTCCAAGAGGCTGCCAAGCTTGGCTTTAAAAGAGCAATTGTTCCAGC
ATCTAATTTAGGTGGTTGGGATTATCCAACGGGCATCCAGATTATAGGAATTGAAACGGTTAATGAAGCGATGAAAGAGG
CATTTTCGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

AAA domain (AAA_25)

(75-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.742

100

0.711
  radA Streptococcus pneumoniae Rx1

62.061

100

0.621
  radA Streptococcus pneumoniae D39

62.061

100

0.621
  radA Streptococcus pneumoniae R6

62.061

100

0.621
  radA Streptococcus pneumoniae TIGR4

62.061

100

0.621
  radA Streptococcus mitis SK321

62.061

100

0.621
  radA Streptococcus mitis NCTC 12261

62.061

100

0.621

Multiple sequence alignment