Detailed information NTG0110659

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACGHCW_RS02790
• Genome accession: NZ_AP031614
• Coordinates: 566885..567868 (+)
• Length: 327 a.a.
• NCBI ID: WP_188014841.1
• Uniprot ID: -
• Organism: Vibrio harveyi strain TUMSAT-2019
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 561885..572868

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACGHCW_RS02755 (VHTUMSATKI_04730)	ftsB	561891..562172 (+)	282	WP_005452106.1	cell division protein FtsB	-
ACGHCW_RS02760 (VHTUMSATKI_04740)	ispD	562174..562884 (+)	711	WP_390502252.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACGHCW_RS02765 (VHTUMSATKI_04750)	ispF	562899..563375 (+)	477	WP_009698769.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACGHCW_RS02770 (VHTUMSATKI_04760)	truD	563421..564464 (+)	1044	WP_390502253.1	tRNA pseudouridine(13) synthase TruD	-
ACGHCW_RS02775 (VHTUMSATKI_04770)	surE	564464..565240 (+)	777	WP_009698768.1	5'/3'-nucleotidase SurE	-
ACGHCW_RS02780 (VHTUMSATKI_04780)	-	565240..565866 (+)	627	WP_390502255.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACGHCW_RS02785 (VHTUMSATKI_04790)	-	565881..566804 (+)	924	WP_009698767.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACGHCW_RS02790 (VHTUMSATKI_04800)	rpoS	566885..567868 (+)	984	WP_188014841.1	RNA polymerase sigma factor RpoS	Regulator
ACGHCW_RS02795 (VHTUMSATKI_04810)	mutS	567962..570523 (-)	2562	WP_009698766.1	DNA mismatch repair protein MutS	-
ACGHCW_RS02800 (VHTUMSATKI_04820)	pncC	570609..571091 (+)	483	WP_009703950.1	nicotinamide-nucleotide amidase	-
ACGHCW_RS02805 (VHTUMSATKI_04830)	recA	571293..572336 (+)	1044	WP_005436413.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37308.16 Da
• Isoelectric Point: 4.6831

>NTDB_id=110659 ACGHCW_RS02790 WP_188014841.1 566885..567868(+) (rpoS) [Vibrio harveyi strain TUMSAT-2019]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNETKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=110659 ACGHCW_RS02790 WP_188014841.1 566885..567868(+) (rpoS) [Vibrio harveyi strain TUMSAT-2019]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGAAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACACCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.132	100	0.859