Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACN6MX_RS10740 Genome accession   NZ_CP183878
Coordinates   2213908..2215611 (-) Length   567 a.a.
NCBI ID   WP_419958919.1    Uniprot ID   -
Organism   Psychrobacillus sp. BM2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2208908..2220611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MX_RS10720 (ACN6MX_10720) - 2209159..2209878 (-) 720 WP_419958915.1 glycerophosphodiester phosphodiesterase -
  ACN6MX_RS10725 (ACN6MX_10725) - 2209871..2211442 (-) 1572 WP_419958916.1 DUF342 domain-containing protein -
  ACN6MX_RS10730 (ACN6MX_10730) spo0A 2211845..2212636 (-) 792 WP_419958917.1 sporulation transcription factor Spo0A -
  ACN6MX_RS10735 (ACN6MX_10735) - 2212853..2213812 (-) 960 WP_419958918.1 SpoIVB peptidase S55 domain-containing protein -
  ACN6MX_RS10740 (ACN6MX_10740) recN 2213908..2215611 (-) 1704 WP_419958919.1 DNA repair protein RecN Machinery gene
  ACN6MX_RS10745 (ACN6MX_10745) ahrC 2215628..2216077 (-) 450 WP_419958920.1 transcriptional regulator AhrC/ArgR -
  ACN6MX_RS10750 (ACN6MX_10750) - 2216180..2216998 (-) 819 WP_419958921.1 TlyA family RNA methyltransferase -
  ACN6MX_RS10755 (ACN6MX_10755) dxs 2216995..2218890 (-) 1896 WP_419962605.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ACN6MX_RS10760 (ACN6MX_10760) - 2218978..2219862 (-) 885 WP_419958922.1 polyprenyl synthetase family protein -
  ACN6MX_RS10765 (ACN6MX_10765) xseB 2219855..2220076 (-) 222 WP_211894586.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 63847.94 Da        Isoelectric Point: 4.9780

>NTDB_id=1106576 ACN6MX_RS10740 WP_419958919.1 2213908..2215611(-) (recN) [Psychrobacillus sp. BM2]
MLKELTIKNFAIIDELTVSFEEGLTVLTGETGAGKSIIIDAVHLLCGGRGSHEFIRHGAKKAELEGLFIISNPGHGVVKK
LADVGIDIEDESIILRRDINQSGKSVCRVNGKLVTIGILREIGASLIDIHGQHESQELMDDKAHIHLLDQFAGENLKEVK
ESYQELYKQYKKWKKELDKLSENEQQIAHKIDLYTFQVEEIADSNLVVGEEEQLQEQKKKLQNFHKVFDKMSNAYDAILA
ESKGLDYIGTAMADLQDIADVDNNIKELSENVSSAFYILQDAAYQIKNELDEMEFDNNQLQIVDERLATIQALKRKYGSS
IEEILDYKDQIQYSLDQLVNRDEQIQKMTEKIRQIEIDLELEAMDLTDKRKKAAKLLSVAIMEQLQELYMEKATFAVMFH
ETVKPVYNENGLDDLSFYISTNVGEPLKALTKIASGGELSRMMLALKSIFSKHQGITSIVFDEVDTGVSGRVAQSIAEKI
AGIASNSQVLCISHLPQVAAMADQHLMIKKEVSGNRTFTVLEEVQNDKRAEELSRMMSGAEITSTTLQHSKELLKLAKNR
KKIIRNV

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=1106576 ACN6MX_RS10740 WP_419958919.1 2213908..2215611(-) (recN) [Psychrobacillus sp. BM2]
TTGTTAAAGGAATTAACGATAAAAAACTTTGCCATTATTGATGAATTGACCGTAAGTTTTGAAGAAGGACTTACTGTGCT
GACTGGAGAAACTGGAGCAGGAAAGTCTATTATTATTGATGCTGTGCATCTGTTATGTGGTGGTAGAGGATCCCATGAGT
TCATAAGACATGGAGCTAAAAAAGCAGAGCTAGAAGGTTTGTTTATTATATCCAATCCCGGGCATGGTGTTGTTAAAAAG
TTGGCAGATGTTGGTATTGATATTGAGGACGAGTCTATTATTTTAAGAAGAGATATTAACCAGTCAGGTAAAAGTGTCTG
TAGAGTAAATGGGAAACTTGTAACAATAGGTATTTTAAGAGAAATTGGTGCTTCTTTAATAGATATACATGGTCAACATG
AGAGTCAAGAACTTATGGACGATAAAGCTCATATCCATTTGTTGGATCAATTTGCTGGAGAAAATCTAAAAGAAGTGAAA
GAATCCTATCAAGAACTTTATAAGCAATACAAAAAGTGGAAAAAAGAACTGGATAAATTATCGGAAAACGAACAACAGAT
TGCACATAAGATTGATTTGTATACGTTCCAAGTAGAGGAAATCGCCGATTCGAACCTAGTTGTAGGAGAAGAGGAACAAT
TACAGGAACAGAAAAAGAAGTTACAAAATTTTCATAAGGTTTTCGATAAAATGAGTAACGCATATGATGCGATTTTGGCT
GAATCTAAAGGTCTAGATTATATAGGAACAGCAATGGCTGATCTTCAAGATATTGCAGACGTTGATAACAATATAAAGGA
ACTAAGTGAAAATGTGTCATCAGCATTTTACATATTGCAAGATGCCGCTTATCAGATCAAAAATGAGTTAGATGAGATGG
AATTTGATAACAATCAACTTCAAATCGTGGACGAGCGTTTAGCTACTATCCAAGCCCTAAAACGGAAATATGGTTCATCT
ATTGAAGAAATACTAGATTACAAAGATCAGATTCAATACAGCTTAGATCAGTTGGTGAATCGTGATGAGCAAATTCAAAA
AATGACAGAAAAAATACGTCAAATTGAAATTGATTTAGAATTAGAGGCTATGGATTTAACGGATAAACGCAAAAAAGCTG
CAAAATTATTAAGCGTTGCTATCATGGAGCAATTACAGGAACTATATATGGAAAAGGCTACTTTTGCGGTTATGTTTCAT
GAGACAGTTAAACCTGTCTACAATGAAAATGGGTTAGACGATTTGTCATTTTATATCTCAACGAATGTAGGTGAACCTCT
GAAGGCATTAACTAAAATTGCTTCAGGTGGGGAACTTTCACGTATGATGCTTGCGCTTAAAAGTATCTTCTCAAAGCATC
AGGGCATTACATCCATTGTTTTTGATGAGGTTGATACTGGAGTAAGTGGACGCGTTGCCCAATCCATAGCAGAAAAAATT
GCTGGAATTGCTTCAAACTCACAAGTACTTTGTATATCTCATTTACCACAAGTTGCAGCGATGGCGGATCAACATCTAAT
GATAAAAAAAGAGGTCAGTGGTAATCGAACATTTACAGTATTAGAAGAAGTACAAAATGATAAACGGGCAGAAGAACTTA
GTCGGATGATGTCTGGTGCGGAAATTACAAGCACAACGTTACAGCATTCGAAAGAGCTATTAAAATTAGCGAAAAATCGC
AAAAAAATTATAAGAAATGTGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.509

100

0.538

Multiple sequence alignment