Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACN4IO_RS08675 Genome accession   NZ_CP183865
Coordinates   1821854..1822468 (+) Length   204 a.a.
NCBI ID   WP_016152483.1    Uniprot ID   R8X084
Organism   Citrobacter braakii strain K1125     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1816854..1827468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN4IO_RS08655 - 1817215..1818975 (-) 1761 WP_016156136.1 AAA family ATPase -
  ACN4IO_RS08660 matP 1819161..1819613 (+) 453 WP_016152480.1 macrodomain Ter protein MatP -
  ACN4IO_RS08665 ompA 1819712..1820770 (-) 1059 WP_419879841.1 porin OmpA -
  ACN4IO_RS08670 sulA 1821128..1821637 (-) 510 WP_019076414.1 SOS-induced cell division inhibitor SulA -
  ACN4IO_RS08675 sxy/tfoX 1821854..1822468 (+) 615 WP_016152483.1 TfoX/Sxy family DNA transformation protein Regulator
  ACN4IO_RS08680 yccS 1822446..1824599 (-) 2154 WP_049283246.1 YccS family putative transporter -
  ACN4IO_RS08685 - 1824618..1825064 (-) 447 WP_016152485.1 YccF domain-containing protein -
  ACN4IO_RS08690 helD 1825190..1827244 (+) 2055 WP_180837241.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.52 Da        Isoelectric Point: 8.6113

>NTDB_id=1106522 ACN4IO_RS08675 WP_016152483.1 1821854..1822468(+) (sxy/tfoX) [Citrobacter braakii strain K1125]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1106522 ACN4IO_RS08675 WP_016152483.1 1821854..1822468(+) (sxy/tfoX) [Citrobacter braakii strain K1125]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAAAACCAGCAGCAGTTAGTATCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGGGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8X084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681

Multiple sequence alignment